AMCG00002627


Basic Information

Item Value
gene id AMCG00002627
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23000727 ~ 23012696 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002627
ATGGAAGTCCTGCTCAAGATTGCCTTCCTCTTGTGGACAGTGCAGCTGTCTACCCAAGACCCTGAGGCTGAAAGTCTCCTCATAAGGCCCAGGAATTTGAAAGGCAATGACGACTGCCCTATCAACGTATACTTCACCGTGGATACCTCAGAGAGCGTGGCACTCAAGGAGTATCCCTGGGGCAGCCAGGTGGACGAGCTGAAAGTGTTCCTCGAGATGTTTGTGCAGAAGCTGCAGGGGAGCACCCTGCAAGCCAAGAAGGTGAAATGGTCCTTCGGGGGACTGCATTTCTCAGACCGGGTTGAGGTCTTCAGTCAGATAACTACCGACACCACTGCCTTCCTGACGAGGGTGAGAAATATCAGGTACATCGGAAGAGGGACCTTCCTGGACTGCGCCCTGAGGAACCTGACGGATCAGGTCCGGAAAGCGTACTCCTCAGTGAAGCCGCAGCTACAGTTCGCCGTGGTCTTGACCGACGGGCATATCACAGGGAACCCCTGTGGAGGAGTCCAGCAGGCCACTGAAGCAGCCAAAGCTGCAGGCATTAAGATCTTTGTGGTGGCGACCAGCGATGACACGATGGAGAGCGAACTAAAACAGATCGCAAGTTCTCCCGTCGAGCTTTACCGCAAGGATTACTTGGCCTTCCCAAAAAACCGGAGGCAACTGGCGGTTAACAAGATCACTGACACAATGGCAAGTATGACCAAGGCTGTAAACGAAGGTGAATCTGAGGGTGCCAAGGGAAGCTTTGGCACTATTGGTGATGCAGGCACCACTGGACAAAGGggagACCCTGGAATAGAAGGTCCAATAGGTTTGCCTGGGTCTAAGGGACAACCTGGAAATTCTGGATACAATGGGATAGATGGCATAAAGGGAGATATGGGGCCAGCAGGTGACTTTGGAGTAAAGGGTGAAGCTGGAGATCCAGGGGACAAGGGTTTTGCCGGACAGAGTGGCAGACCTGGAATGACGGGATTGAAGGGACTGCATGGAGAAAAGGGTGTCCTCGGCTACATCGGAAATCCAGGTCTTCCGGGTCAGAAAGGATCGAAGGGGATGCCAGGACTTCCTGGGGATGTGGGTGACCTTGGTACAAGAGGTGACAGTGGGGCATCGGGTCTACGTGGTAAGACAGGGGGCAAAGGTGATAAGGGAGAAGTAGGcccagagggagagagaggtatgCCTGGAAACATGGGAGAGAACGGGGTCATGGGGTCCAACGGGGAGGCAGGTGATTTTGGACCAAGAGGAGACACTGGGGATCCAGGGGCCAAGGGGGACCAAGGAAAAGACGGCTACAACTATGTGGGTCCTAGAGGAACACAGGGGTCTAGAGGGTATTATGGAGAGAAAGGAGGACATGGCCCTAAAGGAACCCCAGGAGATGCAGGAGATCCAGGCCCCGAGGGGGAGCCAGGCGACAGAGGGGTGAGAGGTCAGCCTGGACCACCTGAGTGCGAAATAATGGGATTTGTGAGAGAAACATGTGGTTGCTGTGACTGTGAAAAACTGTGCCCTGCTGTGGACCTAGTGTTTGTGATTGACAGCTCGGAAAGTATTGGAAAATCCAACTTCAGCCTTGCCAAAAACTTTGTTATCAGTGTGGCAAACAGACTAGGGAAAATGGCAAAGAATATTTCTGATGTATCAGGTTCCCGGCTGGGGGTAGTGCAGTACAGCCATCAGGATGCTGTACAGGCGATACGGATGGATGATCCGGATGTAACATCGATCACCAGTTTCAAAGCCAAAGTCAAAGCAATGGAGTGGATAGCCGGGGGGACATGGACACCCTCTGCCCTGAAGTTCACCTACGATAACCTGATAATGCCAGGGAGACGACTGCGCACCAAGGTGGTGGCCATTGTCATAACAGACGGACGTTACGACCCCAAAGACGTGGACAACCTGGAAGCCCTTTGCAAAGGAGTGGAGGTGTACGCCATTGCAATTGGCGACATGTTTGACACCAGTGCAGAAAGACAGTCTTTGGAGAAAATCGCCTGCAATACAGGTGACAGAGTGAAGACGCTCAGCGTGTATGCCGATCTGACTGCAGAAGAGTTCCTGGAGGAAATTGAACAAATCCTTTGTCCAGAAGCCGATCATATCTGCCCAGACATGAAATGTTCCACAGCTCTCCAGGTGGCTCCTCTTGTGCAACGCCCCGTTGACATCCTGTTCCTAGTGGATGGCTCAGAAAGAACCGGAGCCGAAAACTTTGGCTCTGTCCTGCACTTCATCGAGCAGGTCTCTCAGGAGATCAGGCTGGCCAGGAAGGAGAATGACTATAAAGGAGCACGTCTAGCTGTGCTGCAATATGGAGGGGAGCAAGAGCCAGATGTGCTGCTAGATTTCTCTCACAGTGAGACCACCATTCGCTCCCTCATCAGCAAGGCTGTTTATCGAGACTCGTCCTCCGTGTTAGGAAATGCCATTCTGTTTGCTGTAGATAATGTAGTGAACAACCGTAACAGTCAATTCAGAGGAGTGCGGAAGAACGCCGAGGTCTCCTTTGTCTTCGTCACAGATGGCATAACTCGTGACCAAAACATCGAGGAAGGCATAGAAGCCATGAGGAAGGCAAACGTGGTCAGCTCTGCAATTGCCGTTGGGCCCGATGTGGACCACAACATATTAGCTCAACTGGTTTTCAAAGATAAAGCCCTGATTTTTCATCTGAAACGCTACGCTGACCTGGTTTCCACAAGAGTTGTCAAACACATTGTGCATTGTCTCGGCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002627 True 2757 mRNA 0.52 21 23000727 23012696

Neighbor

gene id symbol gene type direction distance location
AMCG00002628 si:rp71-45k5.4,psma2,LOC108440756,LOC108425697,LOC107686300,LOC106570382,LOC107724313,LOC103023870 coding downstream 4207 22990253 ~ 22996520 (-)
AMCG00002617 NA coding downstream 14156 22971505 ~ 22986571 (-)
AMCG00002614 NA coding downstream 32034 22959715 ~ 22968693 (-)
AMCG00002615 NA coding downstream 41807 22955276 ~ 22958920 (-)
AMCG00002616 derl1,LOC107593655,LOC107736822,LOC107657695,LOC107699495 coding downstream 73914 22909190 ~ 22926813 (-)
AMCG00002626 sdha,LOC107694085,LOC107729872,LOC105909048,LOC107751682 coding upstream 6250 23018946 ~ 23028347 (-)
AMCG00002625 NA coding upstream 21112 23033808 ~ 23036859 (-)
AMCG00002632 NA coding upstream 409102 23421798 ~ 23471546 (-)
AMCG00002633 zfpm2 coding upstream 665246 23677942 ~ 23682594 (-)
AMCG00002634 NA coding upstream 764993 23777689 ~ 23787869 (-)
G124669 NA non-coding downstream 1619 22996819 ~ 22999108 (-)
G124591 NA non-coding downstream 347008 22653482 ~ 22653719 (-)
G124582 NA non-coding downstream 402172 22597999 ~ 22598555 (-)
G124535 NA non-coding downstream 561998 22436886 ~ 22438729 (-)
G124434 NA non-coding downstream 1047056 21941177 ~ 21953671 (-)
G124765 NA non-coding upstream 643288 23655984 ~ 23663572 (-)
G124779 NA non-coding upstream 860982 23873678 ~ 23928150 (-)
G124873 NA non-coding upstream 1398333 24411029 ~ 24411336 (-)
G124907 NA non-coding upstream 1563469 24576165 ~ 24577131 (-)
G124975 NA non-coding upstream 1935454 24948150 ~ 24950358 (-)
AMCG00002596 NA other downstream 1098130 21901292 ~ 21902597 (-)
AMCG00002584 NA other downstream 1322182 21647055 ~ 21678545 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 4959154 17933464 ~ 18041573 (-)
G123829 NA other downstream 5011262 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 5294438 17690008 ~ 17706289 (-)
G124719 NA other upstream 73298 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 169225 23181921 ~ 23192656 (-)
G124829 NA other upstream 1248869 24261565 ~ 24261823 (-)
G124848 NA other upstream 1279091 24291787 ~ 24339566 (-)
AMCG00002682 NA other upstream 3254356 26267052 ~ 26279621 (-)

Expression


Co-expression Network