AMCG00002628 (si:rp71-45k5.4,psma2,LOC108440756,LOC108425697,LOC107686300,LOC106570382,LOC107724313,LOC103023870)


Basic Information

Item Value
gene id AMCG00002628
gene name si:rp71-45k5.4,psma2,LOC108440756,LOC108425697,LOC107686300,LOC106570382,LOC107724313,LOC103023870
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22990253 ~ 22996520 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002628
CGCTGCATGTCTGTGCTGCGTGAGTTCCCCCGGCAAGTGAGCGAAAATGGCAGAAAGAGGCTATAGTTTCTCCCTCACAACATTCAGCCCTTCAGGCAAGCTTGTCCAGATTGAATATGCCCTGGCAGCTGTAGCCGCCGGAGCCCCCTCTGTTGGAATTAAAGCTGCAAATGGAGTTGTGTTGGCCacagagaagaaacagaagTCCATCCTGTACGATGAACAGAGTGTACACAAAGTGGAGCCAATTACCAAACACATAGGCATGGTGTACAGTGGCATGGGTCCAGATTACAGAGTGCTGGTGCGAAGAGCTCGTAAGCTGGCACAGCAGTACTCTCTGGTGTACCAGGAGCCCATTCCCACCGCCCAGCTGGTACAGAGGGTCGCCTCTGTGATGCAGGAGTACACGCAGTCCGGTGGTGTGCGTCCTTTTGGAGTATCGTTGCTGATTGCTGGTTGGGATGAAGGTCGTCCATATCTGTTCCAGTCAGACCCTTCTGGTGCATATTTTGCTTGGAAAGCAACTGCAATGGGGAAGAACtatgtaaatggaaaaacattccTTGAAAAAAGGTACAATGAAGATCTGGAGCTTGAAGATGCCATTCACACAGCAATCTTAACGCTAAAGGAAAGTTTCGAAGGTCAGATGACTGAAGACAATATCGAGGTGGGCATCTGCAATGAAGCAGGGTTCAGAAGACTTTCTCCCGCAGAGGTCAAAGACTATCTGGCTGCCATTGCCTAAAATACCATCAGCATCAAGTTTACCTGGtctgggattttgttttgttgaatttaTTGGTGAAACCTACACACttacaaatactgtattttcagctgagaaacatttttatcatttgtattttcttccctCTTAATAGAAAGCTACCAATAAATGCcggtaattaaaaaaacataagagtCCAGGCCTTTTTCTTAATCTCCTACCCAAATGGTCTTTTTTAACTGGTTTTGTTGAATCTTTGATCTTTATTCTTTTGCATAGGGGATTAACACTGATGAATCTGGCATTTAAAATGACTGCACATTTTTATGAGCACAAGATGTCAGCGGGGCAGTCTTGTCCTTTTCTCATTCAGTTTGAAAGGTAAAAGGATTCAACATTTACTACGCTTATGGAGTTGTTTTGTTCTACCTTCTCAGCCCAACAGTCAAAATACTTCATCTATATTCTACCAAATCGATTGTCTTTTCAAACTGACTGCAATTGTG

Function

symbol description
psma2 Involved in response to virus. Located in extracellular exosome and nucleus. Part of proteasome complex.

NR:

description
PREDICTED: proteasome subunit alpha type-2-like

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
K02726 PSMA2; 20S proteasome subunit alpha 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002628 True 1239 mRNA 0.44 8 22990253 22996520

Neighbor

gene id symbol gene type direction distance location
AMCG00002617 NA coding downstream 3682 22971505 ~ 22986571 (-)
AMCG00002614 NA coding downstream 21560 22959715 ~ 22968693 (-)
AMCG00002615 NA coding downstream 31333 22955276 ~ 22958920 (-)
AMCG00002616 derl1,LOC107593655,LOC107736822,LOC107657695,LOC107699495 coding downstream 63440 22909190 ~ 22926813 (-)
AMCG00002611 has2,LOC107673001,LOC107596747 coding downstream 284508 22694206 ~ 22705745 (-)
AMCG00002627 NA coding upstream 4207 23000727 ~ 23012696 (-)
AMCG00002626 sdha,LOC107694085,LOC107729872,LOC105909048,LOC107751682 coding upstream 22426 23018946 ~ 23028347 (-)
AMCG00002625 NA coding upstream 37288 23033808 ~ 23036859 (-)
AMCG00002632 NA coding upstream 425278 23421798 ~ 23471546 (-)
AMCG00002633 zfpm2 coding upstream 681422 23677942 ~ 23682594 (-)
G124591 NA non-coding downstream 336534 22653482 ~ 22653719 (-)
G124582 NA non-coding downstream 391698 22597999 ~ 22598555 (-)
G124535 NA non-coding downstream 551524 22436886 ~ 22438729 (-)
G124434 NA non-coding downstream 1036582 21941177 ~ 21953671 (-)
G124431 NA non-coding downstream 1064397 21925607 ~ 21925856 (-)
G124669 NA non-coding upstream 299 22996819 ~ 22999108 (-)
G124765 NA non-coding upstream 659464 23655984 ~ 23663572 (-)
G124779 NA non-coding upstream 877158 23873678 ~ 23928150 (-)
G124873 NA non-coding upstream 1414509 24411029 ~ 24411336 (-)
G124907 NA non-coding upstream 1579645 24576165 ~ 24577131 (-)
AMCG00002596 NA other downstream 1087656 21901292 ~ 21902597 (-)
AMCG00002584 NA other downstream 1311708 21647055 ~ 21678545 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 4948680 17933464 ~ 18041573 (-)
G123829 NA other downstream 5000788 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 5283964 17690008 ~ 17706289 (-)
G124719 NA other upstream 89474 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 185401 23181921 ~ 23192656 (-)
G124829 NA other upstream 1265045 24261565 ~ 24261823 (-)
G124848 NA other upstream 1295267 24291787 ~ 24339566 (-)
AMCG00002682 NA other upstream 3270532 26267052 ~ 26279621 (-)

Expression


Co-expression Network