AMCG00002629 (sqle,LOC106579093,LOC102798444,LOC106605546)


Basic Information

Item Value
gene id AMCG00002629
gene name sqle,LOC106579093,LOC102798444,LOC106605546
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23181921 ~ 23192656 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002629
atgatGGAGATGAGAGAGGAAGAACAGCGTAGCTCCAATACTGACGGACGTTCAGTGGAAGGGGTTGACGCGCACACAGTGAACGGCTACGTCATTCACGACAGAGAGAGCAAAGCCGAGGTTGAGATTCCCTACCCGGTGGAGGAGAACCAGGTCCAGTGTGGGAGAGCATTTCACCACGGACGCTTCATCATGGGGCTGCGGCGCACAGCCTCTGCACAACCCAAtgtTAAATTCATTGAAGGCACTGTGACTAACCTGCAAGAAGAGGATGGGAGCGTCACAGGGATTCAGTACAAGGACAAAGAAACTGGGGATATCAAAgaaATTCACGCTCCTCTTACAGTGGTTGCAGATGGCTGTTTTTCCAAGTTTAGGAAAAACTTAATCTCCGGGAAAAACTCTCCACAGTTCAAGCCACATCACGCCGAACTTGTTCTAGCCAACCCCAGCCCAGTTCTCATATACCAGATCTCATCCTCTGAAACTAGGGTTCTGGTGGATATCAGAGGGGAAATGCCAAAGAACATAATTGAGTACATGGCTGAGAAGATACAACCACAGCTGCCAGAGCACTTACAAGAGCCTTTCCTCATTGCACTGCAGAATGACCGTCTGAGGACCATGCCAGCGAGCTTCCTGCCTCCCTCACCTGTGAACAAACCagGGGTCCTTCTTTTGGGAGACGCCTACAATATGAGACACCCATTGACTGGAGGAGGAATGAGTGTT
>TU156342
CTGCTTTGTCAGCTGAGTGTCTTCCTGTGCTGAAGAAGGGCACTGTGCACAGATTCACTTTGCCCCTTGTGTGAAGGTTGCTGTGCTGCTTCTCCTAATTCCTCCTCATTGTGTGGCAGGTTCAGTGGAAGGGGTTGACGCGCACACAGTGAACGGCTACGTCATTCACGACAGAGAGAGCAAAGCCGAGGTTGAGATTCCCTACCCGGTGGAGGAGAACCAGGTCCAGTGTGGGAGAGCATTTCACCACGGACGCTTCATCATGGGGCTGCGGCGCACAGCCTCTGCACAACCCAAtgtTAAATTCATTGAAGGCACTGTGACTAACCTGCAAGAAGAGGATGGGAGCGTCACAGGGATTCAGTACAAGGACAAAGAAACTGGGGATATCAAAgaaATTCACGCTCCTCTTACAGTGGTTGCAGATGGCTGTTTTTCCAAGTTTAGGAAAAACTTAATCTCCGGGAAAGTGCGCGTCTCGTCTCATTTTGTTGGCTGCATAATGAAGAACTCTCCACAGTTCAAGCCACATCACGCCGAACTTGTTCTAGCCAACCCCAGCCCAGTTCTCATATACCAGATCTCATCCTCTGAAACTAGGGTTCTGGTGGATATCAGAGGGGAAATGCCAAAGAACATAATTGAGTACATGGCTGAGAAGATACAACCACAGCTGCCAGAGCACTTACAAGAGCCTTTCCTCATTGCACTGCAGAATGACCGTCTGAGGACCATGCCAGCGAGCTTCCTGCCTCCCTCACCTGTGAACAAACCagGGGTCCTTCTTTTGGGAGACGCCTACAATATGAGACACCCATTGACTGGAGGAGGAATGAGTGTTGTGCTCAATG

Function

symbol description
sqle Enables FAD binding activity and squalene monooxygenase activity. Involved in lipid droplet formation; regulation of cell population proliferation; and sterol biosynthetic process. Located in intracellular membrane-bounded organelle. Is integral component of membrane.

NR:

description
PREDICTED: squalene monooxygenase

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004506 squalene monooxygenase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002629 False 732 mRNA 0.50 8 23181931 23192656
TU156342 True 851 TUCP 0.50 6 23181921 23185168

Neighbor

gene id symbol gene type direction distance location
AMCG00002625 NA coding downstream 145062 23033808 ~ 23036859 (-)
AMCG00002626 sdha,LOC107694085,LOC107729872,LOC105909048,LOC107751682 coding downstream 153574 23018946 ~ 23028347 (-)
AMCG00002627 NA coding downstream 169225 23000727 ~ 23012696 (-)
AMCG00002628 si:rp71-45k5.4,psma2,LOC108440756,LOC108425697,LOC107686300,LOC106570382,LOC107724313,LOC103023870 coding downstream 185401 22990253 ~ 22996520 (-)
AMCG00002617 NA coding downstream 195350 22971505 ~ 22986571 (-)
AMCG00002632 NA coding upstream 229142 23421798 ~ 23471546 (-)
AMCG00002633 zfpm2 coding upstream 485286 23677942 ~ 23682594 (-)
AMCG00002634 NA coding upstream 585033 23777689 ~ 23787869 (-)
AMCG00002638 NA coding upstream 847685 24040341 ~ 24045879 (-)
AMCG00002639 rims2a,rims2,LOC104967056 coding upstream 858963 24051619 ~ 24065028 (-)
G124669 NA non-coding downstream 182813 22996819 ~ 22999108 (-)
G124591 NA non-coding downstream 528202 22653482 ~ 22653719 (-)
G124582 NA non-coding downstream 583366 22597999 ~ 22598555 (-)
G124535 NA non-coding downstream 743192 22436886 ~ 22438729 (-)
G124434 NA non-coding downstream 1228250 21941177 ~ 21953671 (-)
G124765 NA non-coding upstream 463328 23655984 ~ 23663572 (-)
G124779 NA non-coding upstream 681022 23873678 ~ 23928150 (-)
G124873 NA non-coding upstream 1218373 24411029 ~ 24411336 (-)
G124907 NA non-coding upstream 1383509 24576165 ~ 24577131 (-)
G124975 NA non-coding upstream 1755494 24948150 ~ 24950358 (-)
AMCG00002596 NA other downstream 1279324 21901292 ~ 21902597 (-)
AMCG00002584 NA other downstream 1503376 21647055 ~ 21678545 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 5140348 17933464 ~ 18041573 (-)
G123829 NA other downstream 5192456 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 5475632 17690008 ~ 17706289 (-)
G124829 NA other upstream 1068909 24261565 ~ 24261823 (-)
G124848 NA other upstream 1099131 24291787 ~ 24339566 (-)
AMCG00002682 NA other upstream 3074396 26267052 ~ 26279621 (-)
AMCG00002688 NA other upstream 3090684 26283340 ~ 26305923 (-)
AMCG00002694 NA other upstream 3420820 26613476 ~ 26664767 (-)

Expression


Co-expression Network