AMCG00002631


Basic Information

Item Value
gene id AMCG00002631
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23652972 ~ 23677437 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002631
atgcagCGGAAAAGGACTGCAGGCCAAAACGCATCGGATTCCGCTTTGCACAATGCTAAGGTATTAcaccaattaaaatgtttcaaagctTTAATTGCGGATTACACAGTAGTAGTAGCTGCCCCCGTGTTCCATTCAAGAGGGAAGTTAATAGACATCGGTTTGGGTCAGAAGATCTATCTGACCTGCAAAGGACAAGGACAGCCTGTTGTTATGCTGGATGCTCCTACTGGTATGTCTTCGGATGTGTGGTTTCAGATACAGGAGGATCTTTCCCGGTTAACTCAAGTGTGTACATATGACAGGGCTGGACTGGGATTCAGTAAACGAGCGATGCAAAACGAGACTACAGGAATGGAAAAAGTCTGGGGAGTGTCAACAACCGGAAGAATGGTTGATGACCTTCACCGCCTTACAAAGGAAGCAAAGATTGAGAAACCCTTCATTCTGGTTGGCTCAGAGCTGGGAGCTCTCAATGGAAGATTTTACAGTCACATCCATGACTCGGAGGTTTCAGATCTTGTCCTCATTGATCCGATCCCCGAAGACATTTTTACAGAGGATCCGTGGCAGCAGTACTGGTACAAAGAGCTGGTGCCTTCCCTTCAGGCAATGCAATTTTTTGCAGCCACTGGACTGAACAGAATGCTACTGATTTTTGGATGGATGAAGCAACCAATCACAGGGGAGCACATCTCTGAGGATCTAATACAACGACAGAAATACCTACTCAGCAACCCGGCTCATCAGAGCGGCTCCGTGGATGAGCATTTCTTCCTTAATGAGAGTGTCTTTCAAGTCAGGGAAATTTCCAAATACAAACCACTTTCTAGCGGAACCTCTGTAACTGTGATAACTGGTGATTATTTTGATGAATTACTCCCAGCCCATCTGAATGAAGCTGTGGCGAAGTGTCAGAAGCAGTTGTTGGAGCAAACCTATCCgacagcaaaacattttcagatttctggAGTTGACCGGAAAATGCTGTACAGAAGTCCCTTTGCAGTGACAAAACATTTAGCGACATTGGTAAAACGCAGAAAGCCTAAACAAGAGAGCCACTAATCTCcatacagtacaaatacatttgaactttTGGAAAAACAGCCCACAAAATGTACAGGAGCCTGCAGaatatatggatatatttatttctgcatcGATACCAGGTATTCTGTTCTATAGTTCAGTCGAACGTATAGGtcattcagttaaaaaaaaaaagatttgccTGTGGAAAGcctcttttaaataattttcacaaCAGTAAGAGTTTGGGAACTGCagttcttgtgtttgttttacaaatacaatcttcttaaaaaaaaaaaaaaaaaaaaaaaattgtacagcAAGCTTTCAGTTAtgaaactgttttgaaaatgtccaAAAACAAACTTCCTTCAAAGCAGAAACCTGACTCTAATTGTTCTTTACtcgaaataaaatgtttgaaac

Function

GO:

id name namespace
GO:0030687 preribosome, large subunit precursor cellular_component

KEGG:

id description
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002631 True 1461 mRNA 0.41 10 23652972 23677437

Neighbor

gene id symbol gene type direction distance location
AMCG00002630 NA coding upstream 245006 23407566 ~ 23407966 (+)
AMCG00002620 NA coding upstream 585172 23056782 ~ 23067800 (+)
AMCG00002624 NA coding upstream 597256 23043824 ~ 23055716 (+)
AMCG00002619 NA coding upstream 619387 23028636 ~ 23033585 (+)
AMCG00002621 NA coding upstream 653487 22996873 ~ 22999485 (+)
AMCG00002635 lrp12,LOC107754924,LOC107714470,LOC107689529 coding downstream 290141 23967578 ~ 23985386 (+)
AMCG00002637 dpys coding downstream 319810 23997247 ~ 24007711 (+)
AMCG00002636 dpys,LOC107686378 coding downstream 342067 24019504 ~ 24036531 (+)
AMCG00002642 NA coding downstream 692447 24369884 ~ 24376014 (+)
AMCG00002646 NA coding downstream 828856 24506293 ~ 24517840 (+)
G124750 NA non-coding upstream 46133 23606537 ~ 23606839 (+)
G124740 NA non-coding upstream 216652 23421973 ~ 23436320 (+)
G124687 NA non-coding upstream 376197 23218330 ~ 23276775 (+)
G124668 NA non-coding upstream 640972 23011435 ~ 23012000 (+)
G124667 NA non-coding upstream 649720 23002991 ~ 23003252 (+)
G124770 zfpm2 non-coding downstream 4576 23682013 ~ 23682226 (+)
G124774 NA non-coding downstream 152233 23829670 ~ 23829984 (+)
G124783 NA non-coding downstream 310265 23987702 ~ 24004361 (+)
G124823 NA non-coding downstream 584111 24261548 ~ 24261841 (+)
G124831 NA non-coding downstream 600997 24278434 ~ 24278640 (+)
G124689 NA other upstream 362437 23152648 ~ 23290535 (+)
AMCG00002623 sqle,LOC106579093,LOC106605546,LOC107686341 other upstream 472929 23068124 ~ 23180043 (+)
AMCG00002622 NA other upstream 662808 22987545 ~ 22990164 (+)
AMCG00002573 NA other upstream 3319942 20241848 ~ 20333030 (+)
AMCG00002561 NA other upstream 4519405 19130067 ~ 19133567 (+)
G124769 NA other downstream 498 23677935 ~ 23681385 (+)
G124863 NA other downstream 744815 24422252 ~ 24422613 (+)
AMCG00002650 NA other downstream 1084447 24761884 ~ 24776815 (+)
AMCG00002661 znf706,LOC103394271,LOC100712275,LOC103364770,LOC106534503,LOC107088369 other downstream 1697505 25374942 ~ 25384312 (+)
AMCG00002684 rpl30,LOC107702100,LOC107568279 other downstream 2597877 26275314 ~ 26279137 (+)

Expression


Co-expression Network