AMCG00002638


Basic Information

Item Value
gene id AMCG00002638
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 24040341 ~ 24045879 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002638
acaaagagaagaaCTCACAGCTATCAGTCATTAATTCCCCCCGAGATACTTAAGCCGGAATATCAGaacGCTGTCATCAACAAGATGCCTGTGATAACAACAATAGGGCAAGCCTGGGCTATAATAGTGGACTTGTACACATCCACTAACAGGCCTGGCTGGAGAAACAACCTTATTCTCTTTCTCACATGTTTTACACTCGGCCTCATTTTTGGCTCCCTACTGTTTGTAGGCCTGTATTGTTCCCTGAGCTATGACATTGTAGTGTCTTCAAGCATTGCTAATGTACTTGCTATGCTGCTGAttggaattttattttttttcaaacgGGTCCGTTGTTTCAGTACgctgttttttatttcctgtttcatGAAGCAAGGTCGAAACTTGCTCATCACAGCTGGGACAAGCGTGGTCATTTACCAGAATGTGAAAAACACTTTCAACAATCTCCAGGGTCTGGCTAGGAGTATGATCTGCAACTTGGAAAGCAGGAAGATTTCTATCAATTTCACTCCCCTTGAACAGTACAGAAAGCTTCTGCAATGGGTGGCTGACAATCTCAAGGGTTTTGGTGATATACTGGGCATCAAATTTGAGTCGAATTTAATTGTCAATGCCTCTGTGTCTGATGGTAACCTGAAGGAAAAACTGATTGAGGCTGAGCACAAGCTGAACGCCACTGCTCAAGCCATGGCTGAAGTACTGAACACAGTTTCTTCCATAAGTCAGAAGGTGCTGCCTGCCTTGGGTGTCATTCTGGTCCTGATTTCCACAGTTATTTTCCTGAGAAGATACAACTACGATAAGAAATATGAGAACACGTTCATCACGCAGCGGTTTGTCCTCTTTGATGAGAAACAAAGAGCCAGTGGAAAGCCACACGTTCTTCCTCTCACAAAGAAGGAACGCAAACGCTACATCACCATCCCCTCGGCTGGGATAACTGCTAAAGAGGGGAGAGTCATGGGGATTTTCATCATTCCAATTATAACCCATGTTTCCACTTGGGCTTTCTTCATTGGAGTCGATTCTCTACTCTACTATCTCATTTTGACAATTGGTGAATACCTGGAGGATATAAAACCAATTGAGGTACCTTTAAAAATGTCCATTGCACATACAGGCCTTTTTCTTAATATACAGACGGGGAGCTCAAGAACAGAAGAGGATTTTTCCTACTCGATTCCACTGTTTGAAAAACACTGTATTCCTAGACCTCAGCTCTTAATCTATAATTCGGTGGGCCCACTGGCGATAATTGTTATCATTCTGATAGTGCTTGGGGTCCTGTCCGCCAAGCTGATGCAGCTGAAAGTTCTGGCCTTGTCACTGTTCTATCCAGACAATGAGGAAGAGCGCATCGAGCATTTGCATGCAAAAATTCTCCAGAAGAGATGCAAGAAGGTCAAAGTCCTGCAGAAATCGGTGATGGAATTAGCGAAAAAGAAAAGTTTTTGGTTTCCAATATTCTTCCGGAATAAAGGGGATGACAGCATATTCTTAACCTGATAGTTTCCTATGCTTTACCAGCAGGAGGGCTGGTGCACTGGAGGACTACTGCCATACAAATAGCAGGCATGTGCGATTGTTATCAAACGCTATTCTGCAGAGTAACTTTGCTCTGCAAAATGAGTGTATGTGTTATGGGGttgttttgggttttaaatGACAGTTTAGAAGTATAGGTAACCCCGTGAGGCACACAGATTACCCCACTTATGTATAAATGAGGGTTATTATTACACACTATTACTTTCTTTATAAGAATGAGCAAGTCAATGTATATGTACGAAGTGTGTGAGATGATCGGTTCAGAGCATATTCTATACAAACATACCATAAAAACAGCTGAATCTTGTATTTCAACCATTAATCAGTTGGGTGAGCTGATAACACCCAATCAATTCAACTTTTgattttttaatagtttttattattcagaTCTGCAAtttctttaacaaaaaacaaaaaacatgtatgcatGTTACAGgttcacagatttgttttattttagtttttccagaAAATGTTGCTATTTTTGTACACTTTGGTGTGTGACTCTATCACAGTCACAGACAAAGTTGTGATTGATGTCAACGTACGTACAAAACATTGCTGCTTTCTGTGTGGGCgctgtttatttctgctttctTGTGAGACATTCTATGGTATGATTTGTAACCTCACTcctgaaataacagcaataaaatgAGTGAAGAATTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002638 True 2228 mRNA 0.41 4 24040341 24045879

Neighbor

gene id symbol gene type direction distance location
AMCG00002634 NA coding downstream 252472 23777689 ~ 23787869 (-)
AMCG00002633 zfpm2 coding downstream 357747 23677942 ~ 23682594 (-)
AMCG00002632 NA coding downstream 568795 23421798 ~ 23471546 (-)
AMCG00002625 NA coding downstream 1003482 23033808 ~ 23036859 (-)
AMCG00002626 sdha,LOC107694085,LOC107729872,LOC105909048,LOC107751682 coding downstream 1011994 23018946 ~ 23028347 (-)
AMCG00002639 rims2a,rims2,LOC104967056 coding upstream 5740 24051619 ~ 24065028 (-)
AMCG00002640 NA coding upstream 94681 24140560 ~ 24183507 (-)
AMCG00002641 NA coding upstream 149842 24195721 ~ 24211357 (-)
AMCG00002644 LOC104967060 coding upstream 303001 24348880 ~ 24369782 (-)
AMCG00002643 cthrc1,LOC107746934,LOC106605648,LOC106578543 coding upstream 331852 24377731 ~ 24386755 (-)
G124779 NA non-coding downstream 112191 23873678 ~ 23928150 (-)
G124765 NA non-coding downstream 376769 23655984 ~ 23663572 (-)
G124669 NA non-coding downstream 1041233 22996819 ~ 22999108 (-)
G124591 NA non-coding downstream 1386622 22653482 ~ 22653719 (-)
G124582 NA non-coding downstream 1441786 22597999 ~ 22598555 (-)
G124873 NA non-coding upstream 365150 24411029 ~ 24411336 (-)
G124907 NA non-coding upstream 530286 24576165 ~ 24577131 (-)
G124975 NA non-coding upstream 902271 24948150 ~ 24950358 (-)
G125036 NA non-coding upstream 1329001 25374880 ~ 25433728 (-)
G125035 LOC108241327,LOC106932681,LOC103371419,LOC103151587 non-coding upstream 1405336 25451215 ~ 25453998 (-)
G124719 NA other downstream 744226 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other downstream 847685 23181921 ~ 23192656 (-)
AMCG00002596 NA other downstream 2137744 21901292 ~ 21902597 (-)
AMCG00002584 NA other downstream 2361796 21647055 ~ 21678545 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 5998768 17933464 ~ 18041573 (-)
G124829 NA other upstream 215686 24261565 ~ 24261823 (-)
G124848 NA other upstream 245908 24291787 ~ 24339566 (-)
AMCG00002682 NA other upstream 2221173 26267052 ~ 26279621 (-)
AMCG00002688 NA other upstream 2237461 26283340 ~ 26305923 (-)
AMCG00002694 NA other upstream 2567597 26613476 ~ 26664767 (-)

Expression


Co-expression Network