AMCG00002641


Basic Information

Item Value
gene id AMCG00002641
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 24195721 ~ 24211357 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002641
ATGATCTTGAAAAGAAGCCCTTCAGCATCCAGGGACCCAAACCAAAAATACGACCAAAGGGAGGAGAGGGGTGACCATTCGCAGTATGCCCCGGTGGACGCTGGGATGCCTAGGTCACCGTCCGACTATGGGGAGCGGGAGCCGCGGCGGGCGCCCCGCAGCTCGCGGATGTACGAGGACGCTGATGTGGCGCGGGGGGAGTACCGGGACCGGCGTGGGCGGCGGCGCTCGCAGGAGTACCCGCTGGATGAGGAGCTAGACGGACAGCAGAGTGAGTATGAGCGGCAGCGGCAGCGGGAGGAGGAATACCAGGCCCGTTACCGCAGTGACCCCAACCTGGCCCGCTACCCCGTCAAGCCGCAGCCCTACGAGGAGCAGATGCGCATCCACGCCGAGGTGTCCCGGGCGCGGCATGAGCGCCGGCACAGCGATGTCTCCCTGGCCTACACCGAGCTGGACGAGCCGCAGGGCACCGTGATGCGGGGGGATCGCCCGTCCCGGCAGCGCTCTGTTTCCGAGAGGCGCATGCCCATGGAGAGCCAGCGCTCCTACTCCATGGAGAGAACTCGAGAAGCTCCGGGTCCCGGCCAGAGGACCTCCAATCACAGCCCCCCGACCCCACATCGAAGCCCCGTGCTGGGAGAGCGGTCTGGGGACATGCGccgcgggggagggggggaccCCATGcgcaagcagcagcagcagcagcagcagcaccatcTGGACCCCAGCTCGGCCGTGCGCAAGACCAAGCGGGAGAAGATGGAGACCATGCTGCGCAACGACTCGCTCAGCTCGGACCAGTCGGAGTCCATCCGGCCCCCGCCGCCAAAGccgcacaaaacaaaaaagggaggCAAGATGCGGCAGGTGTCCCTCAGCAGCTCCGAGGAGGAACTGGCCACCACCCCGGAGTACACCAGCTGCGACGACGTGGAGATCGAGAGCGAGTCAAACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002641 True 960 mRNA 0.66 3 24195721 24211357

Neighbor

gene id symbol gene type direction distance location
AMCG00002640 NA coding downstream 12214 24140560 ~ 24183507 (-)
AMCG00002639 rims2a,rims2,LOC104967056 coding downstream 130693 24051619 ~ 24065028 (-)
AMCG00002638 NA coding downstream 149842 24040341 ~ 24045879 (-)
AMCG00002634 NA coding downstream 407852 23777689 ~ 23787869 (-)
AMCG00002633 zfpm2 coding downstream 513127 23677942 ~ 23682594 (-)
AMCG00002644 LOC104967060 coding upstream 137523 24348880 ~ 24369782 (-)
AMCG00002643 cthrc1,LOC107746934,LOC106605648,LOC106578543 coding upstream 166374 24377731 ~ 24386755 (-)
AMCG00002645 NA coding upstream 176777 24388134 ~ 24406980 (-)
AMCG00002647 mc5r coding upstream 475216 24686573 ~ 24687842 (-)
AMCG00002648 NA coding upstream 538852 24750209 ~ 24760885 (-)
G124779 NA non-coding downstream 267571 23873678 ~ 23928150 (-)
G124765 NA non-coding downstream 532149 23655984 ~ 23663572 (-)
G124669 NA non-coding downstream 1196613 22996819 ~ 22999108 (-)
G124591 NA non-coding downstream 1542002 22653482 ~ 22653719 (-)
G124582 NA non-coding downstream 1597166 22597999 ~ 22598555 (-)
G124873 NA non-coding upstream 199672 24411029 ~ 24411336 (-)
G124907 NA non-coding upstream 364808 24576165 ~ 24577131 (-)
G124975 NA non-coding upstream 736793 24948150 ~ 24950358 (-)
G125036 NA non-coding upstream 1163523 25374880 ~ 25433728 (-)
G125035 LOC108241327,LOC106932681,LOC103371419,LOC103151587 non-coding upstream 1239858 25451215 ~ 25453998 (-)
G124719 NA other downstream 899606 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other downstream 1003065 23181921 ~ 23192656 (-)
AMCG00002596 NA other downstream 2293124 21901292 ~ 21902597 (-)
AMCG00002584 NA other downstream 2517176 21647055 ~ 21678545 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 6154148 17933464 ~ 18041573 (-)
G124829 NA other upstream 50208 24261565 ~ 24261823 (-)
G124848 NA other upstream 80430 24291787 ~ 24339566 (-)
AMCG00002682 NA other upstream 2055695 26267052 ~ 26279621 (-)
AMCG00002688 NA other upstream 2071983 26283340 ~ 26305923 (-)
AMCG00002694 NA other upstream 2402119 26613476 ~ 26664767 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_02337884_02402668 RIMS2 coding CI01000027 null 2337884 ~ 2402668 (+)
eurasian perch (Perca fluviatilis) G69963 NA non-coding NC_053118.1 CM020915.1 2080315 ~ 2081422 (+)