AMCG00002643 (cthrc1,LOC107746934,LOC106605648,LOC106578543)


Basic Information

Item Value
gene id AMCG00002643
gene name cthrc1,LOC107746934,LOC106605648,LOC106578543
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 24377731 ~ 24386755 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002643
CAGGGATTCACACAAGCTGAGGATTACTCTACAGCAAGCAGTCGGGTCTGAAGAGGGACTCACTGTATTTGAGTTTTTCTGTGATCAGATAAAAAGATAGAAGGCCCTACTGGACGTCTGAATCTAAGTAACAGAAGAcgctttgtttaaaaaagttgGGCATACATGGGATAAACTGAATAAGAAATAACGACTAATATTGTTGCGTTTTGCGTAATCCCAGGTCAGATCTGGCAATTATCCGAGCCATTCAGTCGATCTGAAAGAGggaaatatatatgaaaacacaaaCCCGTTACATTCCGAAATCCCCAAGGGACTTTTGGGTTTTCGTGATCCGAGACAGACATTTCTTCGCCAGTAGGAGACAGTGCGCACTTCACCTCCCCAACCCAGCCTAGGAACTGAAGCCATTCCCCCGCAGCCGCACTGAGGCGCCTTGTGTCCCGCTTGTGCCTCAGGCTCGCTGTGTGACTATGGGCTCTCTCCTGGCTCGCCTGCTCTTCTTCACCTGGACCATCCTGCACTTCTGCGGGACAGAGAAAGTGAGACAGAGGGCTCTTCGCCAGAGGGATGCGGAGTTCACTGAAAGATACAATGGCTGCATGCAAGGGCCAGCAGGCACCCCAGGCCGAGATGGGAACCCTGGTGTGAATGGCATTCCTGGAATCCCTGGACGAGACGGGTTGaagggagagaagggagagtGCATGAAAGAGATCCTGGAGGAGCCCTGGAGACCCAACTTCAAACAGTGTGCCTGGAAGTCCCTTAACTATGGCATTGATCTAGGCAAAATTGCAGAATGTACGTTCACCAAGCTGCGCAGCGACAGCGCTCTCCGAGTCGTCTTCAGTGGCTCCCTGCGGCTGAAGTGCAAGAACGCCTGCTGCCAGCGGTGGTACTTCACCTTCAATGGGGCTGAATGCACTGGCCCCCTGCCTGTTGAAGCCATCATCTACCTAGACCAGGGCAGCCCTGAGTTCAACTCCACTATCAACATTCACAGAACCTCCTcagTTGAGGGGCTGTGTGAAGGCATTCACGCAGGCCTGGTGGATGTTGCCGTCTGGGTGGGGACCTGCGCTGACTATCCCAGGGGCGACGCCTCTACTGGCTGGAATTCTGTGTCCAGGGTCATCATCGAAGAGCTGCCGAAGTAACGATGGTCACCAAACCACAGTCAAAATGCACCTttcttagtgttttttttttatatatttttttttttaaatcaatgtattttgtaatctgAACCCATGAAATATGAAACTCCGCTAGAAGAAAACTTCAGCAACCGATCAAAATGCCCATCTTCATTTGTTGTCTTGAATGTTAAAAGGGAGcattagaaacatttaattcaggAGTAGAATATCTTAGTGTTCTGTAATAGCCTTTAAGATTTCGTGTTTTTGTACTCAATaaatgaaacttttttttttttttttacttactttTGGGTTA

Function

symbol description
cthrc1 Predicted to enable Wnt-protein binding activity and frizzled binding activity. Predicted to be an extracellular matrix structural constituent. Predicted to act upstream of or within several processes, including establishment of planar polarity involved in neural tube closure; inner ear development; and ossification involved in bone remodeling. Located in extracellular space. Part of collagen-containing extracellular matrix. Implicated in Barrett's esophagus.

NR:

description
PREDICTED: collagen triple helix repeat-containing protein 1-like

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002643 True 1467 mRNA 0.48 4 24377731 24386755

Neighbor

gene id symbol gene type direction distance location
AMCG00002644 LOC104967060 coding downstream 7949 24348880 ~ 24369782 (-)
AMCG00002641 NA coding downstream 166374 24195721 ~ 24211357 (-)
AMCG00002640 NA coding downstream 194224 24140560 ~ 24183507 (-)
AMCG00002639 rims2a,rims2,LOC104967056 coding downstream 312703 24051619 ~ 24065028 (-)
AMCG00002638 NA coding downstream 331852 24040341 ~ 24045879 (-)
AMCG00002645 NA coding upstream 1379 24388134 ~ 24406980 (-)
AMCG00002647 mc5r coding upstream 299818 24686573 ~ 24687842 (-)
AMCG00002648 NA coding upstream 363454 24750209 ~ 24760885 (-)
AMCG00002651 NA coding upstream 389510 24776265 ~ 24786604 (-)
AMCG00002652 NA coding upstream 424601 24811356 ~ 24834198 (-)
G124779 NA non-coding downstream 449581 23873678 ~ 23928150 (-)
G124765 NA non-coding downstream 714159 23655984 ~ 23663572 (-)
G124669 NA non-coding downstream 1378623 22996819 ~ 22999108 (-)
G124591 NA non-coding downstream 1724012 22653482 ~ 22653719 (-)
G124582 NA non-coding downstream 1779176 22597999 ~ 22598555 (-)
G124873 NA non-coding upstream 24274 24411029 ~ 24411336 (-)
G124907 NA non-coding upstream 189410 24576165 ~ 24577131 (-)
G124975 NA non-coding upstream 561395 24948150 ~ 24950358 (-)
G125036 NA non-coding upstream 988125 25374880 ~ 25433728 (-)
G125035 LOC108241327,LOC106932681,LOC103371419,LOC103151587 non-coding upstream 1064460 25451215 ~ 25453998 (-)
G124848 NA other downstream 38165 24291787 ~ 24339566 (-)
G124829 NA other downstream 115908 24261565 ~ 24261823 (-)
G124719 NA other downstream 1081616 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other downstream 1185075 23181921 ~ 23192656 (-)
AMCG00002596 NA other downstream 2475134 21901292 ~ 21902597 (-)
AMCG00002682 NA other upstream 1880297 26267052 ~ 26279621 (-)
AMCG00002688 NA other upstream 1896585 26283340 ~ 26305923 (-)
AMCG00002694 NA other upstream 2226721 26613476 ~ 26664767 (-)
AMCG00002705 klhl38a,LOC103030765,LOC106570780,LOC103376378,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC104967054 other upstream 2468138 26854893 ~ 26875246 (-)

Expression


Co-expression Network