AMCG00002644 (LOC104967060)


Basic Information

Item Value
gene id AMCG00002644
gene name LOC104967060
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 24348880 ~ 24369782 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002644
CTCCCGGTGGCTTCACCCAGGTCACGTGACGATAACAGATGACCCATGACCTTTTCTGGGAACACGTGTGCAAGATGGAGTAACGCACGTTTGGTTCCTTTTgtatatttctattaaatatacaACCCATTTAATCATAATTTCCCAGCGTACTTGTAAAATGAAGGTGAAGGTATTGAGCAGAAACCCGGATGATTATATCCGTGAAACGAAGAAGGATATTCAGCGAGTTCCCAGGAACTATGACCCAACCTTGCACCCCTTTGAGGTGCCAAGAGAGTACACCCGAGCCCTCAATGCCACCAAACTGGAGCGGGTGTTTGCTAAGCCATTCCTGGCCTCTCTGGATGGGCACAAGGACAGTCTGAGCTGCATGGTCAAACACCCCACCAGTCTGTCCACACTGCTTTCAGGAGCCTGTGATGGGGAGGTCAAAATCTGGAACTTGACCAAACGGGAGTGTGTGCGTTCAGTACAGGCACACGAAGGGTTCGTGCGAGGGATGTGTGCCAGATTCTGCGGCACTTCTTTCTTCACGATTGGAGATGACAAAACCATCAAACAATGGAATATGGAGGGACCTGCATATGGTGAGGAAGAAGAGCCACTGAACACAATACTCGGAAAGGTAGTGTACACAGGAATTGACCACCATTGGAAAGAAGGCACCTTTGCCACATGTGGGCAGCAGGTGGACATCTGGAACGAACAGAGGACCAGCCCCATACGCACCTTCACTTGGGGCGTGGACAGCATCAACAGTGTCCGCTTCAATCCTGTGGAGATCGTAATGAGTTTGCGAAGCAACAGCTTGTGCTGGAATCCAATGGAAGCTTTTATGTTCACTTGTGCAAACGAAGACTACAACTTGTACACGTTCGATATGCGTCGCCTGGACTCTCCTGTGATCGTGCACATGGACCACGTGTCTGCAGTTCTGGACGTTGACTACTCCCCAACCGGGAAAGAGTTTGTGTCAGCCAGTTTTGATAAATGCATCCGTATCTTCCCTGCAAACAAGGGACACAGCAGAGAGGTCTACCATACTAAACGGATGCAGCACGTCATCTGTGTGAAGTGGTCCGCTGATAATAAGTACATTCTGAGTGGGTCTGACGAGATGAACATCCGCTTGTGGAAGGCAAACGCATCGGAAAAACTTGGAGTGCTGGCTCCACGGGAGAAGGCTGCGCTGAACTACAGCCAGAAACTGAAGGAGAAGTTTCAGCATCACCCTCAGATCAAGCGCATCGCCCGCCATCGCCACCTGCCCAAGACCGTCTTCAGCCAAGCCAAGGAGCTGCGTGTCATGAAGGAAGCTCGCCGCAGAAAgGAAACTAATGTTCGCAAGCACAGCAAGCCTGACTCCGTTCCTATTGTACCAGAGAAAAAGAAGCATGTTGTGGCTGTTGTGGAATAATTGTGGATGGATTGACGTGCCGAAATGGTGCCTGGCTCTGTGCATTGCTACCAAGGACTGATCAATTCCGTCTATGTGCTCAAAAGACTCAACCCCAAATTCAACCCCTGTCAATCTTACAGGATATAGTTGAAAGTATTTACTTTTGTTAATAACTTGTTCAGATTTTGTGAACtttgataaaataaagtgatgTCCATATCCAGTATTTATATGTGGTcttattgaaatgtttgaaagtTGTCTTCTGCCTTAGGTCTTACACTTCCTTTACAGGGGTGGTTCTACAGGTGTGGCCCAGGGTAGCTATGGCCACCCCTGGAAAGTGCGTGGC

Function

NR:

description
PREDICTED: DDB1- and CUL4-associated factor 13-like

GO: NA

KEGG:

id description
K11806 DCAF13, WDSOF1; DDB1- and CUL4-associated factor 13

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002644 True 1754 mRNA 0.49 10 24348880 24369782

Neighbor

gene id symbol gene type direction distance location
AMCG00002641 NA coding downstream 137523 24195721 ~ 24211357 (-)
AMCG00002640 NA coding downstream 165373 24140560 ~ 24183507 (-)
AMCG00002639 rims2a,rims2,LOC104967056 coding downstream 283852 24051619 ~ 24065028 (-)
AMCG00002638 NA coding downstream 303001 24040341 ~ 24045879 (-)
AMCG00002634 NA coding downstream 561011 23777689 ~ 23787869 (-)
AMCG00002643 cthrc1,LOC107746934,LOC106605648,LOC106578543 coding upstream 7949 24377731 ~ 24386755 (-)
AMCG00002645 NA coding upstream 18352 24388134 ~ 24406980 (-)
AMCG00002647 mc5r coding upstream 316791 24686573 ~ 24687842 (-)
AMCG00002648 NA coding upstream 380427 24750209 ~ 24760885 (-)
AMCG00002651 NA coding upstream 406483 24776265 ~ 24786604 (-)
G124779 NA non-coding downstream 420730 23873678 ~ 23928150 (-)
G124765 NA non-coding downstream 685308 23655984 ~ 23663572 (-)
G124669 NA non-coding downstream 1349772 22996819 ~ 22999108 (-)
G124591 NA non-coding downstream 1695161 22653482 ~ 22653719 (-)
G124582 NA non-coding downstream 1750325 22597999 ~ 22598555 (-)
G124873 NA non-coding upstream 41247 24411029 ~ 24411336 (-)
G124907 NA non-coding upstream 206383 24576165 ~ 24577131 (-)
G124975 NA non-coding upstream 578368 24948150 ~ 24950358 (-)
G125036 NA non-coding upstream 1005098 25374880 ~ 25433728 (-)
G125035 LOC108241327,LOC106932681,LOC103371419,LOC103151587 non-coding upstream 1081433 25451215 ~ 25453998 (-)
G124848 NA other downstream 9314 24291787 ~ 24339566 (-)
G124829 NA other downstream 87057 24261565 ~ 24261823 (-)
G124719 NA other downstream 1052765 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other downstream 1156224 23181921 ~ 23192656 (-)
AMCG00002596 NA other downstream 2446283 21901292 ~ 21902597 (-)
AMCG00002682 NA other upstream 1897270 26267052 ~ 26279621 (-)
AMCG00002688 NA other upstream 1913558 26283340 ~ 26305923 (-)
AMCG00002694 NA other upstream 2243694 26613476 ~ 26664767 (-)
AMCG00002705 klhl38a,LOC103030765,LOC106570780,LOC103376378,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC104967054 other upstream 2485111 26854893 ~ 26875246 (-)

Expression


Co-expression Network