AMCG00002645


Basic Information

Item Value
gene id AMCG00002645
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 24388134 ~ 24406980 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002645
GACGGAGTCAGGAAGCAACTGTATTgtgagggaaagagagaagacagaaagtcattaaatggtttaaaaatacagtaagacGTCCGGATCGCTGAAGAACTGAATGTGCTCTTGATACGAACTGAAGAAAAACGGATTACTGACTATTATTAGGTTGGCAGCGAGCAATCCTCATGGTCCTCTGTTGACTCTACAGCTACTGCTCTCTTCTGCTGTCCACTGCAATGAGCTACAAGAGCAGAGAATGTGGATGATGATTTGCAGCTGACGAGTGAACCAATCGAAGAATTGGGAGCTGCATCCAAAGCTGATCCCAGACCTGTTCCTGAAAACCCACTTCACTGGTCTACACAGCCACCAACAAAATGCAGAGACTCTGGCTTGTTTGGTTCTGCCTGGAGGTGATGGCAGTGCCTTTGAGTCATGGGCATAGTTTGTTTACCTGTGAACCCATCAAAGTCCATCGGTGTTTGAGCATGCCCTATAACGTGACTTTCTATCCCAATCTCATGGAGCACTATGATCAGGATATAGCTGCAAGCCAGATGGGGCCCTTTGTGCCCCTGATCAACATGAACTGCTCTCGCGATGTGCACTTGTTCCTGTGCCAGGCCTTTGTGCCTCACTGCACCGAGGACACTAAAGTCATCCTCCCTTGCCGAGCCCTCTGTGAGAAGGTGCTCTCAGACTGTCAGAATGTCATGGACATGTTCCAGCTCACCTGGCCCCCAGAGCTGCATTGCCACCGATTGAGGGAATGTCGCAGCTCTCCAGATGGCTCCCCTGCTCCTCCCACAAAGCCGGTGATCACTCCAAAGGCCTCACCCTCTATGCAGAGGGACTTCGGCTTTTGGTGCCCCTTACAGTTCAAGACCCCACCTGAACAGGGCTCCAAATTCCTAGGCGCGAAAGAGTGCGCTCCCCCCTGTGCCAATATGTACTTCAAGGCCCACGAAATTGAATTTGCCAAGAACTTCATTGGAGTGTCCTCCATCGTCTGCCTGGGCGCCACGCTTTTCACCTTCTTGACCTTCCTGATTGACGTCAAGAGGTTCCGCTACCCAGAGCGGCCCATCATCTTCTATGCCGTCTGTTACAGTGTGGTGTcccttatttatttcattggcTTCCTGCTGGGCAACCGCACAGCTTGCAACCCGGCCAATGTGGTGCCAGGGAGTGTCCAGACGGTGGTGCTGGGCTCACAGAACAAGGCCTGCACTATCCTCTTCATGCTTCTCTATTTCTTCTCCACAGCAGGGACAGTCTGGTGGGTCATCCTGACCATCACTTGGTTCTTGGCCGCAGGGCCCAAGTGGAGTTGTGAGGCCATTGAGAAAAAAGCGGTGTGGTTCCATTCGGTGGCCTGGGGGATCCCGGGGGCAATGACAGTCATGCTGTTGGCCTTGAACAAAGTGGAGGGGGACAACATCAGCGGCGTGTGCTTCGTTGGTCTGTATGACCTGGACTCCCTGCGCTATTTCATCCTGGTGCCGCTGTGTATCGGCGTGGTGGTCGGGCTCTCCATGCTGCTCGCCGGCATCATCTCTCTTAACCACGTACGCCAGGTCATCCAGCACGACGAACGCAATCAGGAGaagctgaaaaagttcatgatCCGCATTGGCGTCTTCAGTGGCCTCTACCTGGTGCCCCTGGTCACTCTGCTGGGTTGCTACATCTATGAACAAAGTCTTCGGGCCACCTGGGAGAGCACCTGGATCCACGATAACTGTCAGAAGTACCACATCCCCTGCTCCTACCAGATAAAGACCTTGGAAAGGCCTGATCTGTCcctgtttttaatcaaatatctGATGACCCTGGTGGCTGGAATCTCCTCTGTATTCTGGGTCAGCAGTAAGAAGACTTGCTCTGAATGGGCGTTTTTCTTTAACAAGACTCGAAAGAGAGATCCTATCAGCGAGAGCCGCAGAGTGCTGCAGGAGTCCTGTGACTTTTTCCTGAAGCACAATGACAGAGTGCAGCACAAGAAGAAGCACTACAAGTCCAGCTCCCACAAACTGAAGGTCATCTCTAAGTCCATGGGGACCAGCACAGGAGTAACCAACAACCACGGGACCTCCACCGTAGCCATCACCAATCACGATGCGCTCGCCCAGGGCACCTTCTCTGAGGTGAGGGTCTCTTCGGAGACCTCCGGGAAAGAGATGGCGGAGAGAGGGTCCTGCAGCCGGGGGAGTCAGCCCACGTCTAAGGCTGGAGAGCGGGAACCAGCCGGTCAGGCTCTACCCGAGAGGAGGAGCAAAGCTGGCAGCTCTGGCAGAGTCAGCAGCCGATCAGAAAGCCTGCAAAGAGTCCCAGATGGAAGTTTTACTGTTGCAAAAATCTGA

Function

GO: NA

KEGG:

id description
K02376 FZD6; frizzled 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002645 True 2354 mRNA 0.53 7 24388134 24406980

Neighbor

gene id symbol gene type direction distance location
AMCG00002643 cthrc1,LOC107746934,LOC106605648,LOC106578543 coding downstream 1379 24377731 ~ 24386755 (-)
AMCG00002644 LOC104967060 coding downstream 18352 24348880 ~ 24369782 (-)
AMCG00002641 NA coding downstream 176777 24195721 ~ 24211357 (-)
AMCG00002640 NA coding downstream 204627 24140560 ~ 24183507 (-)
AMCG00002639 rims2a,rims2,LOC104967056 coding downstream 323106 24051619 ~ 24065028 (-)
AMCG00002647 mc5r coding upstream 279593 24686573 ~ 24687842 (-)
AMCG00002648 NA coding upstream 343229 24750209 ~ 24760885 (-)
AMCG00002651 NA coding upstream 369285 24776265 ~ 24786604 (-)
AMCG00002652 NA coding upstream 404376 24811356 ~ 24834198 (-)
AMCG00002654 NA coding upstream 478006 24884986 ~ 24916583 (-)
G124779 NA non-coding downstream 459984 23873678 ~ 23928150 (-)
G124765 NA non-coding downstream 724562 23655984 ~ 23663572 (-)
G124669 NA non-coding downstream 1389026 22996819 ~ 22999108 (-)
G124591 NA non-coding downstream 1734415 22653482 ~ 22653719 (-)
G124582 NA non-coding downstream 1789579 22597999 ~ 22598555 (-)
G124873 NA non-coding upstream 4049 24411029 ~ 24411336 (-)
G124907 NA non-coding upstream 169185 24576165 ~ 24577131 (-)
G124975 NA non-coding upstream 541170 24948150 ~ 24950358 (-)
G125036 NA non-coding upstream 967900 25374880 ~ 25433728 (-)
G125035 LOC108241327,LOC106932681,LOC103371419,LOC103151587 non-coding upstream 1044235 25451215 ~ 25453998 (-)
G124848 NA other downstream 48568 24291787 ~ 24339566 (-)
G124829 NA other downstream 126311 24261565 ~ 24261823 (-)
G124719 NA other downstream 1092019 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other downstream 1195478 23181921 ~ 23192656 (-)
AMCG00002596 NA other downstream 2485537 21901292 ~ 21902597 (-)
AMCG00002682 NA other upstream 1860072 26267052 ~ 26279621 (-)
AMCG00002688 NA other upstream 1876360 26283340 ~ 26305923 (-)
AMCG00002694 NA other upstream 2206496 26613476 ~ 26664767 (-)
AMCG00002705 klhl38a,LOC103030765,LOC106570780,LOC103376378,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC104967054 other upstream 2447913 26854893 ~ 26875246 (-)

Expression


Co-expression Network