AMCG00002648


Basic Information

Item Value
gene id AMCG00002648
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 24750209 ~ 24760885 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002648
gtttaaattgtcaCAGTTGGCCTGTCCGTTTCGATTATTAAGTATGggtttataaaatgtgtatttgaatgcattgtatttatGACTGGATTTAGACAGACGATGTGTTGTTTAGTCGTAGAAGACTCTTGATGTAATGCACTTAAATCCCTAGGAAGTTGGATTTCAATTGTGCTGCGATGCTGCAGCACTGCATAAGAAGCAATAGCAAAGGTTTGGATTGAGCCATCTAGACAACCGTGTAagaaacatttactttaaaaggAAATGCTACACCTTTCTTTCACCCAAGATTGAGAATGGAAAGATTGGCTAAGAACGAAGAATGCTGTCTCGATGCAGACTTGTCCAAGTCGGTACACGACACAGAGGATGGCGTGGAAGGAGATGGTAATGGACTTCCCTCCTTTAAAGACTCGATCAGCACTGAGAAACAGGAGAAGGCCATGGTGAGCCTGACGTCCCCAGTTAAGAGGAAACTGGAGACAGAAGATGATCATCCAGCCAAGAGAGCGcACTCTGAGCAGGGCCATGGTCAGATGGTAGCTGTGCATTATAATACACTGCAGGAAGTTGGCTTAGCAGCTCGCAGCCAGAGCAGGATCTTTTACCTCCGCAACTTCAACAACTGGCTCAAGAGCGTTCTTATTGGTGAAATGCTGAACAAAGTAAGGCAAAGCCAAAGGGAGGTGTGTGTGCTCGATTTGGGCTGTGGGAAAGGAGGTGATTTGCTGAAGTGGAAAAAAGGCAGAATCAGTAAAATTGTGTGTGCAGATATAGCGTCAGTGTCAGTAGAGCAGTGTAAACAGCGCTATAGTGACATAAGGAAAAGAGGTCGCCCCAACGACCGCATCTTCTCTGCAGAGTTTGTCACAGCTGATTGCACAAAGGAGGTCCTGGCGGAAAAACTGAAAGACCCTAAGATGACCTTTGACATCTGTAGCTGTCAGTTTGTCTATCACTATTCCTTTGAGACACGAGAGCAGGCAGATATGATGCTTAGAAATGCCTGTGAGAGACTGAGACCCGGGGGTTACTTCATTGGTACCACGCCCAATGCCTATGAACTGATAAAGCGACTTGAAGCATCCGAGACGAATTGCTTTGGAAACGACATCTACAAAGTCACGTTTCAGAAGAAAGGAGACTACCCCCTCTTCGGCTGTCAGTACGATTTCAACCTGGAGGGAGTTGTCAACATTCCTGAGTTCCTTGTATACTTCCCGTTGTTTGAGGAGATGGCAAAGAAGTACAACATGCGACTGGTTTTTAAAAAGACTTTCTACGAGTTCTTTCAAGAGAAGATTCAGGATGAGGAgcataaaatgttaatgaagaGGATGCAGGCATTAGAACCATACCCAGCAGATGACAGAAATAAATTGGTGTCGGACAGTCCAGAAGAATATGAACATGCTGAAAAGTTCAGAAAATCTCATGATGTAAAACTACCTTTGGGAACATTAAGCAAATCGGAGTGGGATGCGACAAGCATATACCTGGTATTTGCATTTGAGAAAATGTCTTGAACTTCCTGAGGGAAAACTCTCACCTATCACAGAAACCTGCATGTGGTTAAGAAACGGATTACAGGATAATTGCCTACTTACTTTGTGCtttctgttcagttttttgtttttgtttacctAGTCCAAGAGACTCATGAATTGACATTTGTGTCTGGAGAGCAGGACAATTTATTCAATCTAGATGGACAATGTCTCGAAGCATTTTACTGTaactgatgatttttttttttttttaattaaatttcttTTCCAagaa

Function

GO:

id name namespace
GO:0006370 7-methylguanosine mRNA capping biological_process
GO:0080009 mRNA methylation biological_process
GO:0036265 RNA (guanine-N7)-methylation biological_process
GO:0005845 mRNA cap binding complex cellular_component
GO:0005634 nucleus cellular_component
GO:0004482 mRNA (guanine-N7-)-methyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K00565 RNMT; mRNA (guanine-N7-)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002648 True 1785 mRNA 0.43 11 24750209 24760885

Neighbor

gene id symbol gene type direction distance location
AMCG00002647 mc5r coding downstream 62367 24686573 ~ 24687842 (-)
AMCG00002645 NA coding downstream 343229 24388134 ~ 24406980 (-)
AMCG00002643 cthrc1,LOC107746934,LOC106605648,LOC106578543 coding downstream 363454 24377731 ~ 24386755 (-)
AMCG00002644 LOC104967060 coding downstream 380427 24348880 ~ 24369782 (-)
AMCG00002641 NA coding downstream 538852 24195721 ~ 24211357 (-)
AMCG00002651 NA coding upstream 15380 24776265 ~ 24786604 (-)
AMCG00002652 NA coding upstream 50471 24811356 ~ 24834198 (-)
AMCG00002654 NA coding upstream 124101 24884986 ~ 24916583 (-)
AMCG00002655 seh1l coding upstream 160221 24921106 ~ 24933751 (-)
AMCG00002653 NA coding upstream 202910 24963795 ~ 24966409 (-)
G124907 NA non-coding downstream 173078 24576165 ~ 24577131 (-)
G124873 NA non-coding downstream 338873 24411029 ~ 24411336 (-)
G124779 NA non-coding downstream 822059 23873678 ~ 23928150 (-)
G124765 NA non-coding downstream 1086637 23655984 ~ 23663572 (-)
G124669 NA non-coding downstream 1751101 22996819 ~ 22999108 (-)
G124975 NA non-coding upstream 187265 24948150 ~ 24950358 (-)
G125036 NA non-coding upstream 613995 25374880 ~ 25433728 (-)
G125035 LOC108241327,LOC106932681,LOC103371419,LOC103151587 non-coding upstream 690330 25451215 ~ 25453998 (-)
G125075 NA non-coding upstream 849232 25610117 ~ 25612297 (-)
G125160 NA non-coding upstream 1365669 26126554 ~ 26130462 (-)
G124848 NA other downstream 410643 24291787 ~ 24339566 (-)
G124829 NA other downstream 488386 24261565 ~ 24261823 (-)
G124719 NA other downstream 1454094 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other downstream 1557553 23181921 ~ 23192656 (-)
AMCG00002596 NA other downstream 2847612 21901292 ~ 21902597 (-)
AMCG00002682 NA other upstream 1506167 26267052 ~ 26279621 (-)
AMCG00002688 NA other upstream 1522455 26283340 ~ 26305923 (-)
AMCG00002694 NA other upstream 1852591 26613476 ~ 26664767 (-)
AMCG00002705 klhl38a,LOC103030765,LOC106570780,LOC103376378,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC104967054 other upstream 2094008 26854893 ~ 26875246 (-)

Expression


Co-expression Network