AMCG00002659


Basic Information

Item Value
gene id AMCG00002659
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 25129616 ~ 25134264 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002659
TGttagtcatgtttttgttttctgttttgcaaatgtaaaagctctatatttattttataatctgcCTGTTACAGTTACTCTATTCTGTTCTGCTGTTTATGTATCAATAATATTAAACTGGGCTTATGCCTGTCAACCTTCCCTAAACTGTGACtgttaaaaaatgattttgctGTAGTTCATTTGATTGGCAACATATGGAATATAAAcattatgtatgtacagtatattttaaatgcatcacaaatataaaacaaatatcatatataaatatttactatGACCAATAGCGTCCTCTTGCAATGACAATTTTCTATATGTATAGAAGTAAATGAGCATGTAATATGGCAGTGTTTACACGCACACAGAGAAAAACCTGACAAAAGATCACTATCGCTTTGTTGCACCCCCATCTACACGTGAGTATGCAAATTCGTAGTATTGAAGCTTTTTTATCTTCTTCAGTAATGTTTTTGCTGAATCTTTGAAGGTCAAAATGTCCCCTTTGTTACTGCCCTACATGCCTCTCGCTTTATGCTTTCTCAAATGACTTACGTTTGTTGAAGTCTTTGGAGGTAAGCAACCTGCTTTGACTTACCACCTTTACAGATAAACACCTGCTGCAGTTTTCATGATGCTTTCTGTAGCAGATGACTAATTTGTACTAGGGGAGACTTAGCCTAAATAAACTACTTCTAGGAAACTGGGAACTGGAAGGTACtgatttgaaaacataaaattacaagtgaagaaaataataatctacagGTAGGactttaaaattagttttaaagtttaaaatgttaatacaatataaacgTATAACTTCTTATTAGCAGCAGAGCAGTAGTAATAATAGAGGTATAAATACCTGGTTTTATAACCTATAAAAATGCTTTAgataataacaatttaatttctgataaaaaaaacaagcaaataaatgaatcaacCACCAACTCCTCCACCCTTACCGCAAGTTTGCAGAGTAAAGAAAAATGCGTctctttaatttcactttatgATTTGTTAATCCTGACCAGCACATTTTGTTTAGGAAACTCACACTGCAAATGTGCATGCATGTGATATGTATGTTGAATttggaaatattacattttctgtagacAATGATATATAAAACCTTGAATTGTACATGTAATTGTCTTGATTTTATCAAGCCATTAGAGAAAAGCTCTTTTAAACTGAGAGATTAGGAGGTTATgacttaaaatattttaaaatggtaacatTATGTACATACTTTATGAAGTATATGCTCAGCTAAATAATTTAGTATTCATCTGATGGAAATGAAAGATTGACAGTGTTCAACGGATAGTCTTGAGTAATACCCTgaaatgctaataaataatacataaggTGGGTATTAATAGACTTCTGAATCATTACCTCTCAGGTCTGAGAtcttcattaataaataagacgTTCTCCCCATATGGGGCAGGTTGCTTTAATTGTGAATATTCTATGTCCCTCTATACAGCAGCACACCACAATATACCATACTGTATACAATTCAAAAGTCATTTCATGCAAGTAACTCCCGCTACTCGAAACTCAAGAATAAATTGTAACATTACTATAAAGGCAAGCACATATATTATacttacaatatgtattttatataagtGCAATTTCACACCAGCATTAGTTTTCGCTAGCTAACTAACAGCAAATGTGAATgtcatttcattaaatatattagcaAGGTTTTGTCCTTTGTAAAGctaaatctattttattaataaagctGAAAACCTATAAGTGGATATCAAATTAATTGTCTTCTATTAATACTAGAAGCAGTAGGAGCTAAAGTTGATTTTAAGTCTCCAACTAATGCATCATTGAATGTGCAATCATTTCCACTGACAGTAAATGACCGTAACTCGCTCATCTTAAAATTCCAGCTGCATTCTTTCACCccagcggcggcggcggcggcggcggctcTCGTTgcttctccttcctcctcccccacacactccctcactccCCGCGAGCATCGCCGCTGTCTTCCCCGACCAACTTCACATGGAGACCCACCGCAGTGTGCACACATGCCTTGCTATAGGCCCGGCTGTTTTGATCATGGGCACTAGGAGGCTCCTGATTGACCAGCGTTTTGCCCAGAACTGTCAGCCAGTCGCGACTAGGCGCCTCCCCTTCCCTGTATAAATGCACGGATCCTATTCATTTTCTGGAGAGACTTTACGCTGCGTCCGGTGAAGTGCGGTGAGTGTGCAATCCACGGCAATAGCTCCACTTCTGcgaattgttttatttcacagctACGCTATAGTCTGGTACAAAGAATCgtaatatatacagagagagagagagaggtaggcATAGTCTGATTTATAACAAGATCCCGTCCAACCCCCCCTAATTGTAAAATGAAGGCTGTTACTCCAGTGCGCCCCGAGAAGGATTCCTCCAGCTGCGGCGAGTTCGCCTTGCGCTGCCTGTCGGATCACAGCCTGAGCATCGCCCGGTGCAAAATGGAAGAAGAGGAGCTCTTTTGCCTGCAATACGACATGAACGACTGTTACAGCAGGCTTAAGCGACTGGTGCCCACCATACCGCAGGATAAGAAAGTCAGCAAAGTGGAGATCTTGCAGCATGTGATCGACTATATACTGGATCTGCAGTTGGCACTGGAAACGCACCCTGCTCTTCTGAGGCAACAGCACGGGAGATGCCCTCCTGCTTCTGCCCGGACACCATTGACCGCCCTTAACACCGAGCAGgcaaGATCCATAATCAAAAACCAAGAAGACAGCATATTGTGTCGTTGAAATACGGCGAAATGGTGTGCAGAGAGCCCATCCAAAGCCAGAAACGCTCCGAGAGGGAATCTGGAGGCAGAATCAGAGGGGattgcaaaaaacacacacacacacacacacacacacacacaacagccaaaacaaaaatgacttgCGAAAGAGAAATGAACTTCTTCCCCTGTGCCACTCTCcatgattacattttcttagaaCTTTAAAAAGTGCTGTGGTTTCAGAAGAAGCAGAGACCTGGTGGACTCATTGAATTGACACCTTTagatattacaattaattataatagtaataatagtgaTTATCATACTTAAAACTGAACATTGTTTCAgaacaacaacatttttaatttactaaaaaaaaaagtttataaagctttactaaaatgtaaaagaacTGTAAATGTTCTTGACATCTATTGTTTAAAATAGGTGATTTATGTCAGACCAGGGATAACTTTTTTCCCTGCACGAAACTGTTCAATATTGTAAAGAGGTATAATGACTTATGgctattaatattgtatatatagagagacagATGTTCTATAAATGTATGTGGAAGAAAATATCTATATGCTTAAATAGACTATTGTAATTATaagatattttttatgaaaatcccttattgttttgtaaatattgtgtttacattttttgtttggtggATGAATCCATTATGTTTTGCTAATAAAGTCCCTTAAAAATCACTTCAGTTTTTGCTTAAGTACGTTTGTgtggtttattaattaaaatatgtgtactgt

Function

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K17695 ID4; DNA-binding protein inhibitor ID4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002659 True 3594 mRNA 0.37 3 25129616 25134264

Neighbor

gene id symbol gene type direction distance location
AMCG00002656 LOC107596739 coding upstream 151040 24966987 ~ 24978576 (+)
AMCG00002657 NA coding upstream 180117 24938866 ~ 24949499 (+)
AMCG00002649 NA coding upstream 449627 24677306 ~ 24679989 (+)
AMCG00002646 NA coding upstream 611776 24506293 ~ 24517840 (+)
AMCG00002642 NA coding upstream 753602 24369884 ~ 24376014 (+)
AMCG00002658 ncalda,ncald,LOC100692199,LOC105901278,LOC103042493,LOC106931336,LOC108268956 coding downstream 145728 25279992 ~ 25298168 (+)
AMCG00002662 ywhabl,LOC105896388,LOC102785026,LOC100692314,LOC107570839,LOC103145058,LOC105016475 coding downstream 279567 25413831 ~ 25433868 (+)
AMCG00002663 LOC103371419 coding downstream 313657 25447921 ~ 25455774 (+)
AMCG00002664 NA coding downstream 325537 25459801 ~ 25506282 (+)
AMCG00002667 rnf19a,LOC102791892,LOC107698652,LOC106570794 coding downstream 422719 25556983 ~ 25573560 (+)
G124965 NA non-coding upstream 166136 24945238 ~ 24963480 (+)
G124910 NA non-coding upstream 522082 24607296 ~ 24607534 (+)
G124908 NA non-coding upstream 547920 24579342 ~ 24581696 (+)
G124862 NA non-coding upstream 718275 24411014 ~ 24411341 (+)
G124860 NA non-coding upstream 722638 24404476 ~ 24406978 (+)
G124999 NA non-coding downstream 4716 25138980 ~ 25139272 (+)
G125005 NA non-coding downstream 165437 25299701 ~ 25303155 (+)
G125011 NA non-coding downstream 193916 25328180 ~ 25328861 (+)
G125022 NA non-coding downstream 322392 25456656 ~ 25456887 (+)
G125109 NA non-coding downstream 719894 25854158 ~ 25862306 (+)
AMCG00002650 NA other upstream 352801 24761884 ~ 24776815 (+)
G124863 NA other upstream 707003 24422252 ~ 24422613 (+)
G124769 NA other upstream 1448231 23677935 ~ 23681385 (+)
G124689 NA other upstream 1839081 23152648 ~ 23290535 (+)
AMCG00002623 sqle,LOC106579093,LOC106605546,LOC107686341 other upstream 1949573 23068124 ~ 23180043 (+)
AMCG00002661 znf706,LOC103394271,LOC100712275,LOC103364770,LOC106534503,LOC107088369 other downstream 240678 25374942 ~ 25384312 (+)
AMCG00002684 rpl30,LOC107702100,LOC107568279 other downstream 1141050 26275314 ~ 26279137 (+)
G125219 NA other downstream 1227948 26362212 ~ 26369525 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G89405 NA non-coding NC_035906.1 CM008309.1 9353736 ~ 9359273 (-)