AMCG00002665


Basic Information

Item Value
gene id AMCG00002665
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 25573833 ~ 25603050 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002665
ATGCATAAGTTCAATTTAGCAGCCATGAGTGCTGAGCAGATTTCCTCGCTGTTGGATCGGGGAGTGACAAAAAACTGCCCAATTCCCGTGGATCATTTGGACTACGCTTTCATAGAGTATTGCACTGACGTGAAGTATCTGGAAAGGATACTGAGAGTGTTAAGGTCTGGTGAGGAAGGGTTATACCCTCATCTCACCGAGTTCTGTGAGAAGCACATCGAAAAGCTGGATCCCAGAAGCCGAACTCTTCGGAAAGATCAGCCTCCAGCTACAGCAGCCAGCTTTTCCTCAGAAGAGTGGTCAGAAATCGCCAACGATTTAAAGAATTGGACAAATGAAGTTAAACAGAATGAAGCTGAACTTAAACACCTGGTTGTTTTGGAAGATGTAGAAAACGTGCCACCGGTGCGTGGGTCAAATTTCTCTGTTCCTTTAACACAGCAGAATAATCCCAACGCTGAAAGAACTAATGCAAAGAAGAGGGTTGCTCCTCGTGATTACAGAGAATGGGACACgttTGACCCTGATGAGGAATGTGCTAAAATTGATGGGATGGCCAGTGAGAAAAGCTCCCCGGCAATCATCCATCATGCCCTTCCTAAACTAAAACGAAAAATAGACACAGCAGCTTTAACTGAACATGAAAAGAGACTCCTTTCAAAtcatgagaaagaaaaaggcaacGAGGCTTTCAGGGCCATGGAGTATGAAGAAGCTGTGGAATATTACTCAAGGAGTCTGTCAGTGCTGCCATCAGTGGTTGTCTACAACAACCGAGCTCAGGCACAGATCAAACTCCAGCACTGGCGCAATGCCCTCAATGACTCATTGCTGCGGCGTGCAACTGTATACAAACACATGGGTGACTTGAAGCCAGCTGCTGATGACTTGAAGAATATACTAGAAGCTGAACCATGGAATTTGACTGCAAAAAATCTTCTGCTTGAGGTCAAAGAAAGAATGACAGATTGTGAGCCAGAAGAGCAGCGAAGGGGAAAGCGACTCTTCATTCAAGATGTGGATGAGCCAGAGGAAGCAGAAGAGGGAGCAGAAACCAGCCTGCATGTGGGTGGGGAGATAGCTGCTTCTGCTGTTCAGGGAGAAATGGGGAACGCTCAGAGAAAGTTTCCCAGCAGAGGAGATTGGGGCCCCCAGACGGAGGAGAAGCCCTCTTTCACCGGCAAGAAGGAGAGGGGTAAAGCAGGCAGTGCAGAGAAGGACAGAGCCCAGGGGGACAGGGCTACAGAGCAGAAGCCGGTGAACGGAGCGCAGGAGAATGGGAGCTGTGCAGGTGACCAGAGCAGTGTCGGTGGCTCAGGTGCTGAGAGCAGCAGGCCTGAAGTCAGCACAGGATCCCTGCCCCCCACTCTGGCCACACTGAAGAGTCAAGGCAATCAGCTCTTTAAGAATGGACAGTTTGCAGATGCCTTAGTTAAATACACCGAGGCCATCAATGGCTTCACAGAGGCTGGTGTTGACAGCCCTGCTGATCTCAGTATTCTGTACTCAAACCGAGCTGCATGCTCTTTGAAGGATGGGAACTGCTCTGATTGTATTCAGGACTGTACCAGAGCCTTGGAGCTTCAGCCTTTCTCTATCAAGCCTCTTCTTCGGAGAGCCATGGCTTATGAGTCACTGGAGCGTTACCGGCAAGCCTATGTGGATTATAAGACTGTGCTTCAGATTGACAGTGGGGTGCAGGCTGCCAATGACAGCGTCAACAGGATCTCAAGATTGTTGATCGAGCAGGATGGTCACAACTGGAGGGAGAAGCTTCCTGAGATCCCAGTGGTGCCCCTGTCAGAGCAGCACAGACGGGAGGAATCTGCATCCAGCTCTGAGCAAAGACAGGAGCGGGGACACAGCAAGCCTGTGCAGGATACAGGTAAAAAATTAGAAGCCCATTTCCTGTCTTTGAAACAAGAAGGAAATGACTTTGTGAAGAATGGCCAGTATAAGGCTGCAATTGGAAAaGCCCTGTGTTATTTAAAACTCAATCAATTTGTAGAAGCAAAACAGGACTGTGACTCTACCCTGCAGTTCGAGCCCTCCAATAAGAAAGCATTTTATAGAAGGGCTCTGGCCTACAAAGGTTTACAGGACTATGCTGCTTGCTGTGCAGACCTGCAGGAAGTGCTACGGCTGGACCCAAGCGTTCAGGAAGCCGAGAaagagctgcaggaggccaGGGAGCTGCTCAGACAGGAAAGCCCCCAGGACAAACACAGAAGGACTATCCCCATCCAGGAGGTGAACGACAGCGACGAAGAGGAGAGCGAAAACACCGCGGACACGAGCAGCGCCACAGACGGAGGAGAGCTCAACTACTGTGCGGCCAGACAGACCTTCCCCTCGCAGCCCACTAACGCATACGAGTTTGGCCAGGCCCTGAACGCAGCACGGTCAAGAGGGGATGCTGGTGCCTGTGCAGAACTACTGTCCAGCATTGAGCCAGAGAAACTCCCCTCCTTCATGAGCAATAAGTTAGATGGAGATGTCTTTAACTTTATTATAAAGGCACTTTACAAACATCTACTTCAGAAAGACCCTGACCTTGTGTACCAGCATCTAAGCCACCTGCATGAAGCAGAAAGGTTCAAGGTGGTACTGCTGCTTTTGGACAAAAGTGACCATCAGCAAATAACAGAACTGTTTGAGCAGCTGTCCAGAGCAGACTGTGATGAATTCACAGTCGATGACCTCCAGCATCTTGCAAATAAGTATGTTGTTTCATGAAAGCACTACCTTCCAGCATGCTTTTATTGGGAGTTGGATCTATGCAAACTGTATTGGCTTATTTTTGATATTAAAGCTGTATAATGCattgtggggggtggggggtgactACTTTAAATTGTACCTCTATTTATTGTTCCATGCTATAAACAAAAATCCTTTAACAGAAGGTCTAACAATTTAGGGGGTGTACACAAACATTTTCTATTGTTTACAGTCATTTAGGGGGTTCTACATTAAAGCATCAGGGTACAGAAATCTTCCCACACAGTTTCACAAACATTGATTTCAGTGGAAGTAATCCCATTAGATGAATATCCTAATTCATGCATTTGCGTTAGTGCAAGATGACAGATCATATTTCTATTCTGGGTCTTCAGTGCCAGTGCCAATGCCAATTGGTCGTGGGGGGGTTGATGGCAGGCAATGGCCCTGGAGTAGAACCAGTTTATAAAAAAGGCCAGCATTTCAACTGTGCCTGAATACCCCAGACACCCCTACAGAGGGGGAAAGTACATAGTGAAACTCATTTGttagaaattaaaattgaaatgtgctGTAACCAAATTGGCGAGCTGTGCTTTTGATGGGAGAGGAGCTGGATTCAATAGGCCACACACTCAATCAGTGGTTTAGGGTTCAGATTGCTGTCTGGTGAGAAAGGGCTGTGTATGTACCTTCTACTGCAATCAAGGGGCTACCTTATTATTAGGGAACTACTTCACCTCAAGAGTCTAAATGATCtccatgttttaatttccaaCCATGGCATGGGTTGGGACTGGTTAATCAGAATTCCacgagacttttttttttgttgaacttacagtaatttgaattgaatttagtaaatatagttttgtctaccaaaataaaacactgaattggTTTTATTCTTAAATGAGAACCTTTAGAATGAATGGTCTAAACCTGATCTAATGTTTAAGACCCGAGTAATGTTTCTTATGACAACAGTTTGCTTCCGTTACCAAATGCTATGAGAAGGCAAGTTGATCACCATTGTCAATAAACCACAGCGGAGGACCTGGAAGGAGAGATGTAGTACCTATGCAGTAAACAGCATTACCAAGCAATACAGTAAGCACGGTGTAagatttctgaagaaaagatgTCCACTTGATAGGACTGTGTACATGTCTTCCACTCAGGTTTCTAAtggtatgtaaaatataatattttaagagGATGTATAGATAAGTTGTTccatgagaaaatgtattttaaatttaaaaagtctgtcttttttttttttttttt

Function

GO: NA

KEGG:

id description
K19870 SPAG1; sperm-associated antigen 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002665 True 4014 mRNA 0.46 18 25573833 25603050

Neighbor

gene id symbol gene type direction distance location
AMCG00002660 NA coding downstream 239171 25299701 ~ 25334662 (-)
AMCG00002653 NA coding downstream 607424 24963795 ~ 24966409 (-)
AMCG00002655 seh1l coding downstream 640082 24921106 ~ 24933751 (-)
AMCG00002654 NA coding downstream 657250 24884986 ~ 24916583 (-)
AMCG00002652 NA coding downstream 739635 24811356 ~ 24834198 (-)
AMCG00002666 NA coding upstream 1117 25604167 ~ 25611494 (-)
AMCG00002671 vps13b,LOC104942627 coding upstream 44763 25647813 ~ 25676650 (-)
AMCG00002670 NA coding upstream 143033 25746083 ~ 25752614 (-)
AMCG00002674 LOC106594737,LOC104943785 coding upstream 185333 25788383 ~ 25822702 (-)
AMCG00002672 vps13b coding upstream 333152 25936202 ~ 25989563 (-)
G125035 LOC108241327,LOC106932681,LOC103371419,LOC103151587 non-coding downstream 119835 25451215 ~ 25453998 (-)
G125036 NA non-coding downstream 140105 25374880 ~ 25433728 (-)
G124975 NA non-coding downstream 623475 24948150 ~ 24950358 (-)
G124907 NA non-coding downstream 996702 24576165 ~ 24577131 (-)
G124873 NA non-coding downstream 1162497 24411029 ~ 24411336 (-)
G125075 NA non-coding upstream 7067 25610117 ~ 25612297 (-)
G125160 NA non-coding upstream 523504 26126554 ~ 26130462 (-)
G125178 NA non-coding upstream 601842 26204892 ~ 26205871 (-)
G125200 NA non-coding upstream 639204 26242254 ~ 26242531 (-)
G125269 NA non-coding upstream 892899 26495949 ~ 26498450 (-)
G124848 NA other downstream 1234267 24291787 ~ 24339566 (-)
G124829 NA other downstream 1312010 24261565 ~ 24261823 (-)
G124719 NA other downstream 2277718 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other downstream 2381177 23181921 ~ 23192656 (-)
AMCG00002596 NA other downstream 3671236 21901292 ~ 21902597 (-)
AMCG00002682 NA other upstream 664002 26267052 ~ 26279621 (-)
AMCG00002688 NA other upstream 680290 26283340 ~ 26305923 (-)
AMCG00002694 NA other upstream 1010426 26613476 ~ 26664767 (-)
AMCG00002705 klhl38a,LOC103030765,LOC106570780,LOC103376378,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC104967054 other upstream 1251843 26854893 ~ 26875246 (-)

Expression


Co-expression Network