AMCG00002671 (vps13b,LOC104942627)


Basic Information

Item Value
gene id AMCG00002671
gene name vps13b,LOC104942627
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 25647813 ~ 25676650 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002671
CTGCTTCACATCTGCATCGAGGGCTGGGGAAACTGGCGCTGGTCCGAACCTTTCAGCATAGACAACGTTGGGACACTCATAAGAACCATCCAATACAAAGGCAGGACGGCCTCACTTATCATCAAGGTTCAACAGCTTAACGGAGTGCAGAAACAAATTGTCATATGTGGCAGGCAGATCATGTGCAGCTACCTCAGCCAGGACATCGAGCTGCGTGTGGTACAGCATTACGTGGGGCCGGACGGTCAGACAGTGGTGAAAGAGCATGTCGACTGCCTGGCTGCTGCCCAGAAGCTGACGTCCTATGTGCTGGAGGACGCGGAGCTGACAGAGCTGTGCGTGCGCGCCCGAGGGGATGAGGAGTGGTCTCGTGACGTGAGGCTAGAGTCCAAAGACAGGGACAACAGCTCCGTGGTGCAGgtGCCCTGTTCCAATGGCTCCCTGTTATACGTGTGGTGTACAGTCATTGCCATTGAGCCCGACTGTCAGATGCAACAGAGAATGGTCAGCTTCAGCCCACTGTTTGTCATGCGGAGTCACCTACCTGACCCAGTCATCATCCACATTGACAAGCGCAGTCTGGGACTGAAAGAGTCCCAGCTGATTTATGGGCAGGGACATGAGGAGCCCCTGGTCAATGTGGAGCCAGACCTCATGCATCACCTAACTTTCCAAGCCAGTCGCAAAGCAGCTCACAAGATAATGCCCATCTCCACAGCGCTCATCAAGCAGATTGTGAACAAAACCCAGGGCCAGAGTCAGGCGCAGCTCCTCTCCGAGTTCTACTCAGTCAAGTCCTCATCTCAGTCACAGTGGCCTTATATCAAGAAGGACTCGGACAGGACTGCTGCAGGGCAGCTTGCCCTCTGGGACAGTCCCATGCAGGTGAAGCTGTCAGCGTGGAAATCTGGTCTCAACACGCTGCTCGTTGAGCTCCTGCCCTGGGCTCTGCTTCTTAACCGCTCCCAGTGGGACCTCTGGCTCTTTGAGGGGGAGAGGATTGAGCCCTTTCAGATTGGCATCTACTGGGCCAATACCAATACAGTGCACAAGTCCACAGCCCTGAAGCTGGTGCATGACCTGACCTCGCCCCGCTGGAAGGATGGCACGGGGGCAGAGGTGGTCACCTTAGATGAGGAGGGCTTTTTGTGCCAGTTCTGCGTTTCCTCAGTGGTGAAGCATGGAATTCAGATCCTCCAGATTGAGGACAGGACCATAGTGGTGAACAACACACCCCACCCCATCTACTACAGGCCCATTCTGTCTGACACAGCCCTGGGCATTGGAGACCAGcCCTTTGACCTTCCAGACACTGCTGTGTTCACCCTCAGCCCTGCTAGCAGCCAGGCCTCCCCCGAGCCCTGCTCCGTACCCTGCTGGGACCTGCTCACTGACTCTGGCCTTGAGGATGCGGAAGCCCCTCTCCCCCTCAAACACATGCTCTTCAGCTCTTGCTCCAGTGCCGAAGCTGGCAGCGCGGGAGGCGCAGGCTGCTGGAGTCTGCCAGCCAGGATTAGGCAAGACTTTCCTAGGCAGAGTGTGGCCGTGCCCACAGATCTCTGCGGCCAGAGTGGGATGTGCACCAGGTCTGTAGTCCTGACTTACCAGGAGCACCTGGGCATCACCTATATTACTCTGAATGAAGACTCCTGCCCTCGCATGATAATCCACAACAAGTGTTCCATCCCATTCCTGATGAAAGAGAATGTAAAAGAGACGCCCAGGACCGAGGTGTGCTGCAGGCCCCTGCCCGCCGAGTCCTCCCTGCACCACGAGCTCTACTACCACTTCTCCAGCTTCCCAGACTGCCGGCAACGGGAGGCCCTTCCCACCATCCTGCTGAAGGCCGCTCAGGAGGGCCAGCCTGTGGAGGAGTGGAGCGACGCTATTGATATCAACAGCCCTGGCACACAGGTACCCACTCACCCACTTGTGCCCGGTCTGGAGGCAATTCCCCAGTCCAGTgTGGTGTTTCTGCCAGGATATGGCTGTGTGTACATTGATGTGTTGCAGCAGAGTGGCACAGTGACACTCACCTTGGCACCTGAGGGGAGGGCAGATGCTGTTCTCAACCAACACCACAGACCCGTGCAGTGCACCCTGGCGCTCCGCGTGCTGCTGAGTGAGGCCAGCCTGGGCGTGAGGGACGACATCACCAGCCAGGTGGGCTCTGCAGAGCTGCTGCGCCTCACACTGTCCCGGGTGCTCCTGAACGTGGCACCAGCGCCACCAGCCTGTGGGGGagaggggctgggggggctgtGCGCTGTGGAGGTGCACTGCGGCAGCCTGCAGGTGGACAACCAGCTTTACAACCGCGCCAGCTTCCACTTTCCCGTGCTGCTGTGCCAGGAGCAGAAGGCCGACCTGCTGCCCTGGTCCTGCGATTCGAACCCCACAGTGTCCCTGCAAGCGCTGGAGGAGTACAAGAGCTCGTGCTTCCTGCAGCTGAGCCTCATGCTGTCCCCCAATGTCCTCAGCGTGGACGAGGTCTCCTTCCAGCTTCAGCCAGCAAGGCTATACCTGGAGGACACCTTTGTGTACTACATCAAGACGCTGTTTCACACCTACATCCCCGACACAGCCTTGAGTAGAAGTCCCACTGTCAGCCCCACCGGTGCCCTGCACCTCCCTGAGCAGGTGCAGCAGTCCATTCAGGCGCTGGTCCACCCGGTGAGGCTGCAGAAACTGACCATTCAGCCCATCAGCCTACTGGTCAGCATCCATGCCTCGCTGAAGCTCTACATCGCCTCAGATCACACCCCCTTGTCCTTCTCCCTGTTCGAGAGGGGGCTCCTTTACACCACTGGGCGGCAGCTCATCCATGCCCTGGCCATGCACTACGCAGCTGGAGCTCTCTTCAGGGCTGGCTGGGTGGTGGGATCTCTGGAGCTCTTGGGCAGCCCGGCGAGTCTGGTGCGGAGCATAGGCAATGGCATCGCAGACTTCTTCCGGCTGCCCTATGAGGGTCTGACCCGCGGCCCCGGGGCCTTCGTCAGTGGAGTGTCCCGAGGGACCACCTCCTTCGTCAAACACATTTCCAAAGGTACACCCACCGCTGCATCGGATCCACTCACACCTCACTCCAGCGGACAACAACGCACTCCTCCTCGACTGGAGCAGCTACATCATCTGCTGCAATCATTCTTTTCTGACTTTGACGTTGAGCTTGGCTGGGTGCTTAATGCTCAATTCCAAGccaaagtaaataataacagctCGGCAATTCTAAAGCCTGCTTTCTCACGATTCTCCCTAGTAATTTGTACCTTGACATCCATCACTAACCTGGCCACCAGCCTGGCGAGGAACATGGATCGTCTGTCCTTGGATGAGGAGCACTACACCCGCCAGGAGGAGTGGAGAAGACAGCTGCCCGAGAGCCTCGGAGACGGGCTGAGACAGGGACTCTCTCGTCTGGGCATCAGCCTGCTGGGTGCCATCGCTGGTATTGTGGATCAGCCAATGCAAAACTTCCAGAAGAACTGGGAGACACAGGGCTCTGCTGGGAGCAAAGCGAAGGGCGTAATCTCAGGAGTAGGCAAGGGCATCGTGGGTGTCTTCACCAAGCCAATCGGGGGCGCTGCTGAGCTCggATTCTGCATGGGGCCGGTCTTTGCCAGCTTCCCAAACAGCTCTATCTTCCCACCGAAGTGCAGTCAGCTCAGGCTCCCAACAGCCACGTCAAATATGAAGATGCTCCAGTCGCTGGGGCGGCCGGAGGTGCATATGGCTCTGGAGGTGACCATTGTGAGCGGCTCTGGCCAGGAGCACCCAGGCTGCCTGCTGCTGACCTCTGAGGTGCTGTTTGTGGTCAGCCTGAGCGAGGACACTCAGCAGCAGGCCTTCCCCGTCACTGAGATCGAATCCCAGCAGGAGCAGGGCGGCCCGCTCACTGTCACCCTGCGGCAGCAGCGCGTGGCCTGCGACTCTGAGGGCGAAAGCACCAGAGAGCGGCTGTCAGAGCTGCAGTACAAGCGCCTGGTGGAGTACGTGACTCGCACCTCCTCCCACATCGTGCCATCCAGCGCcaccctgcagcagcagcagccgccacAGGTGGTGGCAGCCGAGCCCCCCTTGGCCAGTGTCAAGACCTACAGATACCTGGTGGAGCCTCACTTTGCCCGTGTGTTTGTGAGCAAGTTCACTATGGTGAAAAACAAAGCCTTGAGAATAGGGTTCCACTGA

Function

symbol description
vps13b Predicted to be involved in protein transport. Implicated in Cohen syndrome.

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 13B isoform X1

GO: NA

KEGG:

id description
K19526 VPS13B; vacuolar protein sorting-associated protein 13B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002671 True 4191 mRNA 0.58 20 25647813 25676650

Neighbor

gene id symbol gene type direction distance location
AMCG00002666 NA coding downstream 36319 25604167 ~ 25611494 (-)
AMCG00002665 NA coding downstream 44763 25573833 ~ 25603050 (-)
AMCG00002660 NA coding downstream 313151 25299701 ~ 25334662 (-)
AMCG00002653 NA coding downstream 681404 24963795 ~ 24966409 (-)
AMCG00002655 seh1l coding downstream 714062 24921106 ~ 24933751 (-)
AMCG00002670 NA coding upstream 69433 25746083 ~ 25752614 (-)
AMCG00002674 LOC106594737,LOC104943785 coding upstream 111733 25788383 ~ 25822702 (-)
AMCG00002672 vps13b coding upstream 259552 25936202 ~ 25989563 (-)
AMCG00002673 osr2 coding upstream 326165 26002815 ~ 26005357 (-)
AMCG00002681 kcns2,LOC102221451 coding upstream 460307 26136957 ~ 26138496 (-)
G125075 NA non-coding downstream 35516 25610117 ~ 25612297 (-)
G125035 LOC108241327,LOC106932681,LOC103371419,LOC103151587 non-coding downstream 193815 25451215 ~ 25453998 (-)
G125036 NA non-coding downstream 214085 25374880 ~ 25433728 (-)
G124975 NA non-coding downstream 697455 24948150 ~ 24950358 (-)
G124907 NA non-coding downstream 1070682 24576165 ~ 24577131 (-)
G125160 NA non-coding upstream 449904 26126554 ~ 26130462 (-)
G125178 NA non-coding upstream 528242 26204892 ~ 26205871 (-)
G125200 NA non-coding upstream 565604 26242254 ~ 26242531 (-)
G125269 NA non-coding upstream 819299 26495949 ~ 26498450 (-)
G125291 NA non-coding upstream 978978 26655628 ~ 26655871 (-)
G124848 NA other downstream 1308247 24291787 ~ 24339566 (-)
G124829 NA other downstream 1385990 24261565 ~ 24261823 (-)
G124719 NA other downstream 2351698 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other downstream 2455157 23181921 ~ 23192656 (-)
AMCG00002596 NA other downstream 3745216 21901292 ~ 21902597 (-)
AMCG00002682 NA other upstream 590402 26267052 ~ 26279621 (-)
AMCG00002688 NA other upstream 606690 26283340 ~ 26305923 (-)
AMCG00002694 NA other upstream 936826 26613476 ~ 26664767 (-)
AMCG00002705 klhl38a,LOC103030765,LOC106570780,LOC103376378,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC104967054 other upstream 1178243 26854893 ~ 26875246 (-)

Expression


Co-expression Network