AMCG00002672 (vps13b)


Basic Information

Item Value
gene id AMCG00002672
gene name vps13b
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 25936202 ~ 25989563 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002672
ATGTTGGAATCTTATGTTACTCCACTTCTGATGAGCTATGTTGACCGCTATATCAAGAACCTAAAGCCATCAGATCTGCAGCTCTCGCTGTGGGGGGGGGATGTGGTTCTGAGCAAACTAGAGCTGAAGCTGGATGTCTTGGAGCAGGAATTGAAGTTGCCTTTCACTTTCCTGAGTGGGCACATTCATGAGCTGCGTATCCATGTGCCATGGACCAAACTGGGGTCTGAGCCTGTGGTCATCACAATCAACACCATGGAGTGCATCTTAAAACTGAAGGATGGAGCTCAGGACGACCATGAAAGCTGTGGCTCCAGCTCAACCAGCCGCAGCGCCACAGAGAGTGTTAAATCATTAGCCAAGCCACGGCGCATCCATCAGGCAGCCCCCAGCGACCCTGACTTACCACCGGGTTATGTTCAAAGCCTCATAAGACGTGTGGTCAATAATGTCAACATTGTTGTCAACAACCTCATCTTGAAGTATGTGGAAGATGACATTGTGCTATCTGTGAACATCACATCAGCGGAATGCTACACTGTAGATGAATTCTGGGATCGGGCTTTCATGGATATCTCGGCTCCTGATCTCGTCCTGAGGAAGGTCATTAATTTCTCTGACTGCACTGTTTGCCTTGATAAGCGCAATGCAAGTGGGAAGATTGAATTCTACCAGGATCCTTTGCTCTATAAGTGCTCCTTTCGAACTCGGCTGCACTTCACTTATGATAACATCAACTCCAAGATACCCTCTGTCATTAAAATTCAGACACTGGTGGAGAGTCTCAAGCTTTCTATTACAGACCAGCAGCTCCCCATGTTCATACGCATAATGGAATTGGGTATCGCTCTTTATTATGGGGAAATAGGCACTCAGAAGGAGGGAGAAACTGAGGAGATGTGCAGCCATTCCAGGGAAACTGTGGTCAACATCACTGGGGTGGAGAGCGAGGCAGATGTCCAGTCCCTACACACTGGTCAGTACCAGAACCCTGAGCTGTACCTACAGCAGGGCAACGAGGAGGATAACCAAAGCTGGGTGTCCTGGGCCTGGTCCTTTGTCCCAGCCATCGTCAGCACTGGGGAGGATGACCAGGAGGAAGGGCTGTACTATCCGCAAACTGAAGAGGATGGCCAAACACGCAGCCCCAGACATCACACCCCTAAGGACCCCATAGTCTCCATTGGCTTCTACTGCACCAAGGCCTCTGTCACCTTCAAGCTCACAGAAATGCAAGCCGAAAGCAGTTACTACAGTCCTCAGAAGGTGAAGTCCAGGGAAGTTCTGTGTTTGGAGCAGGAGGGAATTACTATAGAGGTGCTCATGATGGGAGAACCATTTTTTGACTGTCAGATTGGTTTTGTGGGCTGCCGGGCCTTGTGCCTAAAGGGAATCATGGGGGTGAAAGATTTTGAGGAGAACATGAACCGATGTGAGGAGGATGCCATCTTCTTCACCTGTGGGGAGAACCTGAGCAGTAAAGGAATGACATATCTCACCAACTCTTTGTTTGATTACCGGAGCCCAGAGAACAATGGTGTTCGAGCAGAGTTCATTTTGGACGCAAATCATCACAAGGAGACGTACACAGAGATAGCTGGCATGCAGCGCTTTGGTGCTTTCTACATGGATTACCTGTACACAATGGAGAACAACAGCGGCAaagACACAGGAGGTCAGCAGGAGTTCTCGGTCATGAATAAAGAGGACGACCCCACTGGTGTCCAGGAGACGTCAGTGAAGAGACTGGTAGTGGGGCCCCTGGACATCCGTCTCCATAGCAGTGCAGTCCACAGGATCCTCAAAATGGTGGCCTGTGGACTTGACCATGAATATGAGCCTTACAGCAGCCCAAAGCCAGATACTATTGATGACGACAGAGTGCTGCCAAGTCCTGAAGAAGTGGTTGCTTTAGAAGAGTTCATCCCCACTCGCCTAACTTGCGTCACTGTGATCAAAATTGCCATCACCATCCCCATGGCAGAGTTCAACCTGCTGGATTCTCTGCTGCCTGTAATTCTGGGCCAGAAGACCTTCACTACTCCTATGAATGTACCAGTGTTCCAGCAAGTGAGGCCTCTGCCTGCCATCAGGTTCCAAGTGGACAAAGTGAATCTGGAGCACTCGGTGCCAATGTATGCCCCCGAGCTGGTCAGCACTGTGAGCAGCTTGAGCCAGCCCTCTGACAACCTGCTTCACCACTGCTATGCTCACTGCTACCTGAAGGTGTTTGGTTTTCAGGCTGGGCTGACCTGCTTGGGTAGCGATGGATCATTTTTGCCCCTCTTTCCCATTGTGCCCTCCTTCAGCACTGCTCTTTATGCCAAACTTCTCAGGCATCCTGTGTAT

Function

symbol description
vps13b Predicted to be involved in protein transport. Implicated in Cohen syndrome.

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 13B isoform X4

GO: NA

KEGG:

id description
K19526 VPS13B; vacuolar protein sorting-associated protein 13B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002672 True 2349 mRNA 0.50 15 25936202 25989563

Neighbor

gene id symbol gene type direction distance location
AMCG00002674 LOC106594737,LOC104943785 coding downstream 113500 25788383 ~ 25822702 (-)
AMCG00002670 NA coding downstream 183588 25746083 ~ 25752614 (-)
AMCG00002671 vps13b,LOC104942627 coding downstream 259552 25647813 ~ 25676650 (-)
AMCG00002666 NA coding downstream 324708 25604167 ~ 25611494 (-)
AMCG00002665 NA coding downstream 333152 25573833 ~ 25603050 (-)
AMCG00002673 osr2 coding upstream 13252 26002815 ~ 26005357 (-)
AMCG00002681 kcns2,LOC102221451 coding upstream 147394 26136957 ~ 26138496 (-)
AMCG00002680 NA coding upstream 218707 26208270 ~ 26234043 (-)
AMCG00002679 NA coding upstream 253124 26242687 ~ 26260306 (-)
AMCG00002689 NA coding upstream 328780 26318343 ~ 26319376 (-)
G125075 NA non-coding downstream 323905 25610117 ~ 25612297 (-)
G125035 LOC108241327,LOC106932681,LOC103371419,LOC103151587 non-coding downstream 482204 25451215 ~ 25453998 (-)
G125036 NA non-coding downstream 502474 25374880 ~ 25433728 (-)
G124975 NA non-coding downstream 985844 24948150 ~ 24950358 (-)
G124907 NA non-coding downstream 1359071 24576165 ~ 24577131 (-)
G125160 NA non-coding upstream 136991 26126554 ~ 26130462 (-)
G125178 NA non-coding upstream 215329 26204892 ~ 26205871 (-)
G125200 NA non-coding upstream 252691 26242254 ~ 26242531 (-)
G125269 NA non-coding upstream 506386 26495949 ~ 26498450 (-)
G125291 NA non-coding upstream 666065 26655628 ~ 26655871 (-)
G124848 NA other downstream 1596636 24291787 ~ 24339566 (-)
G124829 NA other downstream 1674379 24261565 ~ 24261823 (-)
G124719 NA other downstream 2640087 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other downstream 2743546 23181921 ~ 23192656 (-)
AMCG00002596 NA other downstream 4033605 21901292 ~ 21902597 (-)
AMCG00002682 NA other upstream 277489 26267052 ~ 26279621 (-)
AMCG00002688 NA other upstream 293777 26283340 ~ 26305923 (-)
AMCG00002694 NA other upstream 623913 26613476 ~ 26664767 (-)
AMCG00002705 klhl38a,LOC103030765,LOC106570780,LOC103376378,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC104967054 other upstream 865330 26854893 ~ 26875246 (-)

Expression


Co-expression Network