AMCG00002673 (osr2)


Basic Information

Item Value
gene id AMCG00002673
gene name osr2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26002815 ~ 26005357 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002673
ATGGGAAGCAAAGCGCTGCCCGCACCTATTCCTCTGCACCCTTCCCTCCAGCTGACCAACTACTCCTTCCTCCAGGCTGTCAATACCTTCCCAGCGGCTGTCGATCATCTGCAAGGCTTGTACGGACTCAGCGCGGTGCAGACAATGCACATGAACCACTGGACACTGGGCTACCCTAATGTACAAGGGCTGAGGTCTACCATCACAGAGATGGCTGCAGCCCAGGGCTTGGTGGACGCTAGGTTTTCTTTTCCAGGTTTACCGTTCGCTGCCCATCTTTTCCATCCGAAGCAAGGTGCGATTGCGCACGTTATCCCAGCTCTTCACAAGGACAGGCCGAGGTTTGACTTCGCCAACCTGGCCATCGCTGCCACCCAGGAGGACCCGCCGAAATCAGCAGACCTTTCCAAGTTGACTACGGGCCTCGGGAGCCCCATTTCAGAGCTGAACAAGTTGTCCCCAGACAGGAAACCCACCAGAGGACGACTCCCCTCGAAGACTAAAAAGGAATTTATTTGCAAGTTTTGTGGCAGGCATTTCACCAAGTCATACAACCTTCTCATCCACGAAAGAACCCACACCGACGAGCGGCCCTACACGCGTTTAGAAGACAAGATCATCTTAGGGACCACAGACATCAAGCCCTACAGCTGTGACCAGTGTGGAAAGGTGTTTCGGCGCAACTGTGACCTGCGACGGCACAGCTTGACACACACTCCACCACAGGACTACTAACAGCTAGCCGTGGAGGCAATTCTGCTtataaaccaaacaaagcaaaaagcaagaaagcaggacaaaataaaacaacaaaaccacagaCTTTACCGATATGCCAACGGACTATAATAAGGATAATCAATATCCCCTAATGGATTGGTTGACTCGGAATTCCACCGTGGAACAGAATTGTCTTCCTCACTCGTGTAAATACCgtgtaaataatgtttttgtactGTCCCTTtttataacaaaaatgtaaaatgtaatttggaaatatgttaaaatgtattttagaaataaagcaaatttaCTATTCGCATTTTATGGTCATTGTTTTTGTCCTTGTGGTTGAACGGGACGCAACTGGTAAAGACTCCgatatgatttattttacacaaactgggggattaaaatgaaacaccCCTTGTGCGAAGAATCACAAATAGAAATCGTATACAATGACACTGACaag

Function

symbol description
osr2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Acts upstream of or within pectoral fin development and pronephros development. Predicted to be active in nucleus. Is expressed in several structures, including gut; intestinal rod; mesoderm; pectoral fin; and pronephros. Orthologous to human OSR2 (odd-skipped related transciption factor 2).

NR:

description
PREDICTED: protein odd-skipped-related 2

GO: NA

KEGG:

id description
K09215 OSR, ODD; odd-skipped

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002673 True 1195 mRNA 0.47 3 26002815 26005357

Neighbor

gene id symbol gene type direction distance location
AMCG00002672 vps13b coding downstream 13252 25936202 ~ 25989563 (-)
AMCG00002674 LOC106594737,LOC104943785 coding downstream 180113 25788383 ~ 25822702 (-)
AMCG00002670 NA coding downstream 250201 25746083 ~ 25752614 (-)
AMCG00002671 vps13b,LOC104942627 coding downstream 326165 25647813 ~ 25676650 (-)
AMCG00002666 NA coding downstream 391321 25604167 ~ 25611494 (-)
AMCG00002681 kcns2,LOC102221451 coding upstream 131600 26136957 ~ 26138496 (-)
AMCG00002680 NA coding upstream 202913 26208270 ~ 26234043 (-)
AMCG00002679 NA coding upstream 237330 26242687 ~ 26260306 (-)
AMCG00002689 NA coding upstream 312986 26318343 ~ 26319376 (-)
AMCG00002687 laptm4b,LOC107702097,LOC107724295,LOC107394696,LOC107565197,LOC105907721 coding upstream 317541 26322898 ~ 26338157 (-)
G125075 NA non-coding downstream 390518 25610117 ~ 25612297 (-)
G125035 LOC108241327,LOC106932681,LOC103371419,LOC103151587 non-coding downstream 548817 25451215 ~ 25453998 (-)
G125036 NA non-coding downstream 569087 25374880 ~ 25433728 (-)
G124975 NA non-coding downstream 1052457 24948150 ~ 24950358 (-)
G124907 NA non-coding downstream 1425684 24576165 ~ 24577131 (-)
G125160 NA non-coding upstream 121197 26126554 ~ 26130462 (-)
G125178 NA non-coding upstream 199535 26204892 ~ 26205871 (-)
G125200 NA non-coding upstream 236897 26242254 ~ 26242531 (-)
G125269 NA non-coding upstream 490592 26495949 ~ 26498450 (-)
G125291 NA non-coding upstream 650271 26655628 ~ 26655871 (-)
G124848 NA other downstream 1663249 24291787 ~ 24339566 (-)
G124829 NA other downstream 1740992 24261565 ~ 24261823 (-)
G124719 NA other downstream 2706700 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other downstream 2810159 23181921 ~ 23192656 (-)
AMCG00002596 NA other downstream 4100218 21901292 ~ 21902597 (-)
AMCG00002682 NA other upstream 261695 26267052 ~ 26279621 (-)
AMCG00002688 NA other upstream 277983 26283340 ~ 26305923 (-)
AMCG00002694 NA other upstream 608119 26613476 ~ 26664767 (-)
AMCG00002705 klhl38a,LOC103030765,LOC106570780,LOC103376378,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC104967054 other upstream 849536 26854893 ~ 26875246 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G114436 NA non-coding CI01000020 null 6913454 ~ 6914288 (+)
grasscarp (Ctenopharyngodon idella) CI01000083_00069763_00073477 OSR2 coding CI01000083 null 69763 ~ 73581 (+)
rainbow trout (Oncorhynchus mykiss) G113634 LOC106591507 non-coding NC_048566.1 CM023220.2 12301209 ~ 12307847 (+)
eurasian perch (Perca fluviatilis) G96372 NA non-coding NC_053120.1 CM020917.1 18659642 ~ 18659881 (+)