AMCG00002674 (LOC106594737,LOC104943785)


Basic Information

Item Value
gene id AMCG00002674
gene name LOC106594737,LOC104943785
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 25788383 ~ 25822702 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002674
ATGAAAGTCATGCCCAGAACTTCAGAGTCCTGGTCCAGCTCGGAAGAAAAAATGAAGGAGTTCATCGGGCTTGTCTGGGATGCCGTGAAGCGCCTCACCCTGCAGttgGAGCTGCAatcctgttgtgtgtttttccctaATGACAGCCTGCCTTCACCCAGCACCATAGTGTCTGGTGACATTCCTGGGACTGTGCGAAGCTGGTACCACAATCAGGCCAGCATGCCTGGGACCCTAGTTGTGTGCCTTCCCCAAATAAGCGTTATGAGTGCTGGCCATAAGTACATGGAGCCACTTCAGGAAATTCCATTTGTTGTATCCAGACCAGTTCTTGAAGAAGGCGATGCATTTCCATGGACAGTGAGCGTGGGCCAGTTCAGTGTGTACACGCTCCTGGGACAGCAGCGCTCCTTCAGTCTGCTGGAGCCCATGGGCTGCACCTCCACTCTGGCTGTCACCTCACACAAGCTGCAGGCCTCAGCACCTGATGCCAGACACTCCTTCATCGTCTGTCTCCATGTCCAGTTGCTGTACGAGCTGTTTCATAGCTGGAGTACAACGTGGAGCAGGATCCAGAAGAGAGGCATCCTGCGCCAGGCCTCAGGCTTTCCTGAACCGCCCATGGGGGCTGCCCCTTCCTCCCCTGTGCGGAGCAGCGCTGGCACTGCGCTCCCTGACACGAGCACCTGCAGCCCCTCTGCTGACTTCGGCTCCCCCACTGAGGGGGATTCTTTGCAAACCGTGGATGACTCCCCTTTCTCAGACGCCGTTACCCTCGAGCAAAAGACCAGCAATATTGGCGGAGCAAGTGGCAGAGTCAGTCTGTGGATGCAGTGGATGTTACCAAAAGTCACAATGAAGCTGTTCGCACCAGATCCTGCCACAAAGGGAACCGAGATCTGTGTGATCAGCGAACTGGAAGATCTCAGTGCCTCTGTTGATGTTCAAGACGTTTACACCAAGATCAAGTGTAAAGTGGGAAGCTTCAACATTGATCACTACAAAAGCAGGCCAGGTGAAGGCTGGCAGACAGGACATTTTGAAGGAGTGATTCTTCAGTGCAAGGAAAAACCAGTGACTGCTGCCAAAGTTTTAGAAGTGTCCCACCAACAACATGGCTTCCTGTCAATCACATACACCCAGGCCGTCACTAAGAATGTGCGGCACAAGCTGACCTCCAGGCAGGAGCGTTGCTCACGGGGCCTGCAGAGGCTGTCCGAGGGCCTGGTGGACAGCTCCCCTCAGTACCTGCGGGAGATCCTGCTCACTGCCCAGCCCTTCGACGTGGTGCTCTCCTGCCCACTGCTCACCACTGTGGCTGGAGTCTTCCAGGCCAAGCTCCCCAAGAGGCACAGGGACAAGGGCAAGTCAGGGGGGCAACCCATGAGAACTCACACCCTGACCTCCCGTAGTCTCCCCCTCATCTACATCAACACCAGTGTCATTCGTGTCTTCTGTCCCAACACGCAGTACACCACAGaatgCCACCTGAAGAAGGAAGACACTCTAGTGCTTAAGATTGGCTCTGTCAGCATGGCTCCGCAGGCTGATAACCCCTTGAGTAGAACCGCCCTGCGCAAAGACATTTAT

Function

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 13B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002674 True 1590 mRNA 0.55 9 25788383 25822702

Neighbor

gene id symbol gene type direction distance location
AMCG00002670 NA coding downstream 35769 25746083 ~ 25752614 (-)
AMCG00002671 vps13b,LOC104942627 coding downstream 111733 25647813 ~ 25676650 (-)
AMCG00002666 NA coding downstream 176889 25604167 ~ 25611494 (-)
AMCG00002665 NA coding downstream 185333 25573833 ~ 25603050 (-)
AMCG00002660 NA coding downstream 453721 25299701 ~ 25334662 (-)
AMCG00002672 vps13b coding upstream 113500 25936202 ~ 25989563 (-)
AMCG00002673 osr2 coding upstream 180113 26002815 ~ 26005357 (-)
AMCG00002681 kcns2,LOC102221451 coding upstream 314255 26136957 ~ 26138496 (-)
AMCG00002680 NA coding upstream 385568 26208270 ~ 26234043 (-)
AMCG00002679 NA coding upstream 419985 26242687 ~ 26260306 (-)
G125075 NA non-coding downstream 176086 25610117 ~ 25612297 (-)
G125035 LOC108241327,LOC106932681,LOC103371419,LOC103151587 non-coding downstream 334385 25451215 ~ 25453998 (-)
G125036 NA non-coding downstream 354655 25374880 ~ 25433728 (-)
G124975 NA non-coding downstream 838025 24948150 ~ 24950358 (-)
G124907 NA non-coding downstream 1211252 24576165 ~ 24577131 (-)
G125160 NA non-coding upstream 303852 26126554 ~ 26130462 (-)
G125178 NA non-coding upstream 382190 26204892 ~ 26205871 (-)
G125200 NA non-coding upstream 419552 26242254 ~ 26242531 (-)
G125269 NA non-coding upstream 673247 26495949 ~ 26498450 (-)
G125291 NA non-coding upstream 832926 26655628 ~ 26655871 (-)
G124848 NA other downstream 1448817 24291787 ~ 24339566 (-)
G124829 NA other downstream 1526560 24261565 ~ 24261823 (-)
G124719 NA other downstream 2492268 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other downstream 2595727 23181921 ~ 23192656 (-)
AMCG00002596 NA other downstream 3885786 21901292 ~ 21902597 (-)
AMCG00002682 NA other upstream 444350 26267052 ~ 26279621 (-)
AMCG00002688 NA other upstream 460638 26283340 ~ 26305923 (-)
AMCG00002694 NA other upstream 790774 26613476 ~ 26664767 (-)
AMCG00002705 klhl38a,LOC103030765,LOC106570780,LOC103376378,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC104967054 other upstream 1032191 26854893 ~ 26875246 (-)

Expression


Co-expression Network