AMCG00002679


Basic Information

Item Value
gene id AMCG00002679
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26242687 ~ 26260306 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002679
GCCTACGCATGCTCTCAGTCTCAGACACGGTGAATAATGTAAATTTCCTCAGGTTAAGAAAGATACACAGCTTTTCCTGTTCGTATGGTAACTGATCAACACATCGTTGTTAAGAAAACGAGAATGCAGGTCATGCGTAAATAAAAGGTTAATGGGGAATCAAGATGTTAAGCTACTGTTGAAAATTGATCAGGACTCCATGGGTTCATAAACGAAAAGCTGTCAGCGTGTATACACTTTCTCTGAGCCAAAGACAGTGgtcttgctgtttttctttgttttactttactttttactgCCTCTGCAAAAATAGCAATGGGATGTTCATCTAGTACCCAGACCGCAGCCCAAGATGGAAACAGACCAGGCACAAAGCCCGGGGAAAGCAATGGAGCAAATAATACAATCGTTCCTCATGATGAAAATTATGACAATGAAACCATTCCTGACCAAGTTCAACTGCCGACGCAGGACCCTCTACCTGAAGACATTAAAGATTCACTAAATCCATATGACAACTCATCCAAAGAGGATGCTGAGAGTCCTGCAGCTGGTGAGGTCCAAGACACCCAGCCTGTCTCTGGGACTGTGGTCCCTGAGGACACCCAACCAGCACACTCTGATCCTTCTGATGCTCCAGAGGCTGCCTCCAGCATACAAGAGAACATGGCAGAAGTGGCCCTCAGCGAACAGCAGGCCGATCCAGAAAAGATACCTAGCTCCACAGAGGTGGTGACGGCAAAGGAAGAAACTGTTGCTTCGGAATCTGTGACAGCTGCCGGTGAAGACAAACAAGATGAAACAGTACCCAGAGTTCCAGACACAGAGCAGGAAAGTGAATCCACTGTGAAGGAGAGTGTTGCAGGGGATATTACAGATGAgtcttctccttctccagctgaAGAGCAGGAAGTGGCACTTGTGACAGACACTGTGGCGGAGATTCCTTCCAGCTCTCCTGAGCCAGTGGAGGAGACAGCGACCAGTACCCCTGAGGCTCATGTTGAAGGTGAGACTGAGGAGAAGGTGGAAGGTGAGACACAGCTGGAATCAGCACCTGCAGAACAAACACAACCTGCAGAGAAAGAGCAGGGTCAGCTGGAGACAACAGACAGCACCCCAGTTACTGATGAGACTGAGGAGAAGGTGGAAGGTGAGACACAAACAGAACCTGCAGAGAAAGAGCAGGGTCAGCTTGAGACGACAGAGGTTACTGtTACCAGCAAAGAGGAATGAAGCACAGGTCTCTTTTTACAAATCCTTGTGCTTGCAGTCAATCGGGAACAGAATGTGCTGCGAAAAGAAGCTTTTtgacaaaatggaaatggaaagaaaaaaacataagaatCACAGATACTTAATATGTGATTGTTACTTGCCAGTTGCCAAGTTGCAAATAAGCAATTCTCCTAGGTTATTGTCAGTAGACACCAGCGTGCCTTTTGTCCTTTGATTGTctaattttgtaaatattttcactTTACTAGTTATATAATCTATAGAAAAATAAGCCTGATTGAGCTATCATTACTTTTAAAgttctatatacattttaaaagtaataacatAACTATCTCAAAGGTTATAATGCATGGAGAAGAAAGAATAAGAAGCTTTGATTTAACACAAACAGTAGTCTTCAGGTTACACCCGtacaaatgtaacaaacaaacaaactgtatgtggctttataaatgtattttaacaatataagACATGGGAccaaatttatatataatcttgTAAGAAAGATTTTTTCCAACGgtgctacattttatataaagaaacaaatacaaaacctgACAGGTTGTAGAATTTGAAAGCTTGacattttttccattctttttaaaaagtaaaaacattacaCTTTGCAAGCACCTATATTGGTTTATCAGAACTGTTTTCCACAAAACCAGTCTAAAGtagtggaaaaaatacaatcttaTCTTCTTATTGAATACCTTCAAACAAGGTCTGAAAAGTCAGTCCACTAGGACTACTTTAAAATCTTTGCACACAGGATTTGATGACTTATCTAGAATACCAAGAATAATTTGGTACATCAACAATGTtctgtataaataaagatgacGTTACTAATA

Function

GO:

id name namespace
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002679 True 2102 mRNA 0.41 5 26242687 26260306

Neighbor

gene id symbol gene type direction distance location
AMCG00002680 NA coding downstream 8644 26208270 ~ 26234043 (-)
AMCG00002681 kcns2,LOC102221451 coding downstream 104191 26136957 ~ 26138496 (-)
AMCG00002673 osr2 coding downstream 237330 26002815 ~ 26005357 (-)
AMCG00002672 vps13b coding downstream 253124 25936202 ~ 25989563 (-)
AMCG00002674 LOC106594737,LOC104943785 coding downstream 419985 25788383 ~ 25822702 (-)
AMCG00002689 NA coding upstream 58037 26318343 ~ 26319376 (-)
AMCG00002687 laptm4b,LOC107702097,LOC107724295,LOC107394696,LOC107565197,LOC105907721 coding upstream 62592 26322898 ~ 26338157 (-)
AMCG00002690 NA coding upstream 103656 26363962 ~ 26375896 (-)
AMCG00002685 rrm2b,LOC107556385,LOC108425040,LOC107394698,LOC106956493 coding upstream 122205 26382511 ~ 26390982 (-)
AMCG00002686 ubr5,LOC102786672 coding upstream 135576 26395882 ~ 26452474 (-)
G125200 NA non-coding downstream 156 26242254 ~ 26242531 (-)
G125178 NA non-coding downstream 36816 26204892 ~ 26205871 (-)
G125160 NA non-coding downstream 112225 26126554 ~ 26130462 (-)
G125075 NA non-coding downstream 630390 25610117 ~ 25612297 (-)
G125035 LOC108241327,LOC106932681,LOC103371419,LOC103151587 non-coding downstream 788689 25451215 ~ 25453998 (-)
G125269 NA non-coding upstream 235643 26495949 ~ 26498450 (-)
G125291 NA non-coding upstream 395322 26655628 ~ 26655871 (-)
G125297 NA non-coding upstream 401398 26661704 ~ 26663029 (-)
G125361 fam91a1,LOC106570778,LOC106589122,LOC107702086,LOC107724353 non-coding upstream 653401 26913707 ~ 26915965 (-)
G125376 NA non-coding upstream 717378 26977684 ~ 26977920 (-)
G124848 NA other downstream 1903121 24291787 ~ 24339566 (-)
G124829 NA other downstream 1980864 24261565 ~ 24261823 (-)
G124719 NA other downstream 2946572 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other downstream 3050031 23181921 ~ 23192656 (-)
AMCG00002596 NA other downstream 4340090 21901292 ~ 21902597 (-)
AMCG00002682 NA other upstream 6746 26267052 ~ 26279621 (-)
AMCG00002688 NA other upstream 23034 26283340 ~ 26305923 (-)
AMCG00002694 NA other upstream 353170 26613476 ~ 26664767 (-)
AMCG00002705 klhl38a,LOC103030765,LOC106570780,LOC103376378,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC104967054 other upstream 594587 26854893 ~ 26875246 (-)

Expression


Co-expression Network