AMCG00002680


Basic Information

Item Value
gene id AMCG00002680
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26208270 ~ 26234043 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002680
ACTTGAAGTTGTTGTACACGGAAGTGAAAGTTCATTCAGCAAAGCAAGAAAGCATGGTTTGGAGAGCTGCACCACGTCTTGTTTAACGTTCACATCAGCGACGAAgACATGTCCGGAGCAAAAGAAAGGATGCATAAAAAAAAGATGAGGAATCAGCCTAGCAATGTCACTTTCCCTTCCCCTGGGTGGGACTCTGCGGGAGATGAGAGACCGAAGCGACATGGAGGACAGACACCGATGCATGATAGGAGGAATGATGATTCTAATAGCCAGGGCCAATCTCCTTCATGGACCAGAGGACACCACTGGGGGGGCAGTGAAAGGGGACCTCGGGGCTATTCACAGGAGCtcccaaaatatattacagCGTCAGTGTTTGCTCGGGCCAGAGCAGCAGAGGTGAATGCCATGCTTAAAGCAGTGACCAAGACAACAGGAAGTGCTCATGTGTTCGGCCCTCTGCCCAAACACATGAGGAGAAGAGCCATGAGCCACAACGTCAAGCGTCTTCCCCGAAGACTGAGGGCCGTGGCCAAAAAGACGCTGGAAAAAACGAGCCAGCAGAAAAAGGAGCAGTCCAAGAGCAAGAGCCGCCGTGCTCGCCGGAGACATGGAAACTTGCTGCTGGAGTTCAACCGCAGGCAGAGGAAGAACATGTGGCTGGAGACGCACATCTGGCATGCCAAGAGGTTCCATATGGTGAAGAAATGGGGCTACTGTCTAGGTGACAGGCCCACTTATAAGTGCTACCGAGCTTGCTTTCGAGCAATGACTAACCACTGCCTCCTCCAGGACCTTTCCTACTACTGCTGTGTGGAGCTACAGGGAGAGGAGGACAAGCTGTTAAGTGCTCTGAGTCAACTGACTAATAAAGAGACTGGGCCAACATTTGCAGCAGCAGCGTGTCTGTCGGGGAGGCGTCAGGgcactgtatatgtgtacaaAGCAGACCAGTTCCCAGACCAGCTGCTTGGACAGGTCCTCTTCATGTGGAGACCGAAGACTGGGGCTTCAGACCACAGGCAACTCTGGATTTGGGCCCATCCTTCTCTAAAGCAGGACCTTCTGACTGAGCTGCAGTCTGTATGCCAGTGCTCAGAGCCAATCAATCCCAGGGCTCCAGAGGCTCACCCAGCCCCGGCACCGTGCCCCACTGAGAGTGCAGCCGAAGAGAAGCCAATtgggaagaagaggaagagagcagATGGGGAGGGACTGGCATCCGTTTCCGTAAAGAAGATCATTGGAGATGGCACTTGCCCACCAAACAAACCAGTGTCCTGGAATTCAAAGACAACTGGAATAGTCATAAGATTCTTGGGCATCATGAAActTGCAGGTGCAACAGTGAGCTCTTGCTTTTGGTGGCCAGAACACTGtatgaatgataataatatgtTGCTTCACCATCAACAAGCAGATATGTTCCAGCTGTTTTCAGGCACTGTCCTTGGACTGACTGTGGATGACCCCAGACTGACAATACCAAAAAAGAGGAGCAAAGTGATGCCTGATACTGAGCAGCTGCAAGGAGTGGATGCAGAGAAGGTCAGATCGCTGACTCTTCAGGGAGTTCCAGTAGAATACGCTGAGAGCTCCCTATGGGACCAGGCAGTGCGGGACAAcGAGCTGAACCGCATGAAGAGCGAGCTCCTGGTCCCAGGGTCACAACTGAGCCCCATTCCCTCTCAGTCCAGGGTGCCTATACTGCTTGTGCAACAGCCAGGGAAGCAGGTCGGAGAAGAGAGGGCGTCCTGGGGCACTGGGTGGGACATCCTGCTTCCAAAAGGCTGGGGAATGGCCTTCTGGGTACCTTTGATATACAGAGGTGTCCGTGTAGGAGGACTGCAAGTGGGCCTGAAGCATTCCCAAAACAAGGGGACCTCGCACTTCCCCAACGACTTCCCTGACTGCCCTGCTGGTGTCCAATTCCTCAAGGAGCAGGAGACCCAGCTAACTGACGACTATAAGAGGCGTCCGCCCGCCAAAAGACCCAATTACATTAAACATGGCTGCCTCGCACCTTTTTGTTGCCCCTGGCAACAGTTGGCAGAGGAGTGGGAGATAATAGTGAGTGATTGTGGAGCAGAGCAGCCTGCCTCTGTGAAGGGTGGTCAAGGCTCTCCAGCTGGGCCTCAGGGCTCTGAAGAAGCATGTTCTGGAGCTCCGAGCACTGTGGAAGGATTTGCACCACAACCAGAAGATCTAGCAGCAAACAGTAATGCAGAAACCAAATTCAAAGTTCTAAGGAATAAGAAAGTGTTGCGGCAGTTGTCAGCCTGGTGTCGACCCATTTCAGCAAAAGGTCAGAGGGCTCGGAAACCTGCAGGCTGCCcccaacaacagcagcagctgtCCTCCCAGGTTGCTGCATCTCTCTTGGCAGCCCACTGCAGGAGTCTGGTCTGGACACGGCTCTCTCTGCTAAAGAAGGGCCGCCCCACTTTGCATGCTATGATCTGTATCCCCACCCCAGGGGACCTGCAGCAGCTCTGCAAAGACCAGGCTTACTGTGGGCCCCTCGAGCCACGCCACACAGACCACTTCAAACACAAAGTGAAACAACTCAAGAAGGGGGACCACAAAAAACTCCACCCTGAAAAAACAAGTCAGGCACCTGATCCCGCATCCGCTCCCACCCTCACGCTGGGGTTGTGGCCCGAGCCTCTGCCCAGCGTAACCTCTCACTGCTCCAGGGTGACTCTGGGTTTTGTGACACAGGGGGATTTCTCCTTGTCTACAGGGTGTGGGGAGGCACTGGGCTTTGTCAGCCTCACAGGCCTGTTTCACATGCTATCCAGCCAGCCTGCTGAGAAGAGGGGCCTGGTGCTGGTGAGGAATGCAGCCTCTCTGCAATACAGATTTGCAAAGCTCAACATTGAAGTGTAATCAGTGCAAGCATATAGCCTAGAGCACTATGACAGACAACCCCCCAGACTGTGAGGAAATGAAAGGATATTAAGCCCACCTTAAAACAATATTCTCTCTGTGAGTGGCACGCAGGTGAAGATTCTGATGTTTAAagctttgtttgtatttttttttttccttggtgAAGTAGGTTATGCATTGATATAGCAGACGCCTTTGAGTTGAAGCAGTGATGCTGCAAGCCCAGAACATGAATTGCATTATTAATCCTCCATTGTCTAAATTGCCTTCCTATTAGAGGACTATCATTACAGCATGAACTAATACATTAGCCTGCAAAAATTAATAGCCATGCAAAATCAATGTTCTTCAACaaaggattaaaacaaaacataaaatgtgagGAGTTATGTATGCTTTGTTCACAatgagcaaaaataataaatgccttatttacacacacaaattccTGTGCTGTTAAGCTATGCTGACTTTTTATTTAGTCTTTTcaccactgttttttttctggcatAACCTAGTTCTTTTGTCAAACGTGTACTGCAAATTTGTGGTCGGTCAATAAACATGATGCCCAGTGTagtggtttgttttaaataaaccttgaatgtattttaataacatcTGGTCAGTCCATGTTATGTACtggctttatttctttatttagtgAGTTTTAAATAGAAGTCTTCCTTCAAACATGATTTCATGGTGCATGAACATTTGTGTAGGTGTTTGACAGGAAAATCCTGTTGCCTGGCAACTGAGAATGAAGGCACCTTGTTAAGCATGACTACATTACACATCTGTTACTGGCTTTGAATATTGCTTGAACAATCCGTTAACTAGttaaatttatattaatatacaaatatttaacagttGCACATCCAGTACTtgaatgtgaagaaaaatacattctacatTGTTTTGCACCTGTATTAGGCCTTCATAATCTTGTTTTGCAGTCTGCATATTATGTCCGAGTATGCCTGACGAAAAGTTACCTTGGTGTAACTAATTAAAAGGGTTTGAAAGTT

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process

KEGG:

id description
K01164 POP1; ribonuclease P/MRP protein subunit POP1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002680 True 3926 mRNA 0.49 16 26208270 26234043

Neighbor

gene id symbol gene type direction distance location
AMCG00002681 kcns2,LOC102221451 coding downstream 69774 26136957 ~ 26138496 (-)
AMCG00002673 osr2 coding downstream 202913 26002815 ~ 26005357 (-)
AMCG00002672 vps13b coding downstream 218707 25936202 ~ 25989563 (-)
AMCG00002674 LOC106594737,LOC104943785 coding downstream 385568 25788383 ~ 25822702 (-)
AMCG00002670 NA coding downstream 455656 25746083 ~ 25752614 (-)
AMCG00002679 NA coding upstream 8644 26242687 ~ 26260306 (-)
AMCG00002689 NA coding upstream 84300 26318343 ~ 26319376 (-)
AMCG00002687 laptm4b,LOC107702097,LOC107724295,LOC107394696,LOC107565197,LOC105907721 coding upstream 88855 26322898 ~ 26338157 (-)
AMCG00002690 NA coding upstream 129919 26363962 ~ 26375896 (-)
AMCG00002685 rrm2b,LOC107556385,LOC108425040,LOC107394698,LOC106956493 coding upstream 148468 26382511 ~ 26390982 (-)
G125178 NA non-coding downstream 2399 26204892 ~ 26205871 (-)
G125160 NA non-coding downstream 77808 26126554 ~ 26130462 (-)
G125075 NA non-coding downstream 595973 25610117 ~ 25612297 (-)
G125035 LOC108241327,LOC106932681,LOC103371419,LOC103151587 non-coding downstream 754272 25451215 ~ 25453998 (-)
G125036 NA non-coding downstream 774542 25374880 ~ 25433728 (-)
G125200 NA non-coding upstream 8211 26242254 ~ 26242531 (-)
G125269 NA non-coding upstream 261906 26495949 ~ 26498450 (-)
G125291 NA non-coding upstream 421585 26655628 ~ 26655871 (-)
G125297 NA non-coding upstream 427661 26661704 ~ 26663029 (-)
G125361 fam91a1,LOC106570778,LOC106589122,LOC107702086,LOC107724353 non-coding upstream 679664 26913707 ~ 26915965 (-)
G124848 NA other downstream 1868704 24291787 ~ 24339566 (-)
G124829 NA other downstream 1946447 24261565 ~ 24261823 (-)
G124719 NA other downstream 2912155 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other downstream 3015614 23181921 ~ 23192656 (-)
AMCG00002596 NA other downstream 4305673 21901292 ~ 21902597 (-)
AMCG00002682 NA other upstream 33009 26267052 ~ 26279621 (-)
AMCG00002688 NA other upstream 49297 26283340 ~ 26305923 (-)
AMCG00002694 NA other upstream 379433 26613476 ~ 26664767 (-)
AMCG00002705 klhl38a,LOC103030765,LOC106570780,LOC103376378,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC104967054 other upstream 620850 26854893 ~ 26875246 (-)

Expression


Co-expression Network