AMCG00002681 (kcns2,LOC102221451)


Basic Information

Item Value
gene id AMCG00002681
gene name kcns2,LOC102221451
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26136957 ~ 26138496 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002681
ATGCGATGCCAGTCCAAGGAATCTATACTGGAGCTGTGCGACGATTACGACGACACCGAGAAGGAGTTTTACTTTGACAGAAACCCTGCACTTTTCCCTTACGTGTTAAATTTTTACAACACTGGCAGGTTGCACGTCATGGCAGAGTTGTGCATTTTCTCCTTCAGTCAAGAAATAGAATATTGGGGCATCAACGAATTCTTCATTGACTCTTGTTGCAGCAATATCTATCACTGCCGGAAAATGGAACCAGTCCAAGACGACTGGGAGGACAAAAGCGAGGAAGAAAGCACCACGTCTTCTTTTGATGAGATTTTGGAGTTCTACAATGACGCAACAAAGTTTGACAAGCAGCCACTGGGAAGCATGAGGAGGAGGATTTGGTTGATGCTTGATAACCCTGGGTATTCAATCCCTAGCAGGATATTCAGTGTACTTTCAATCCTTGTAGTCCTGGGTTCTATTGCCACCATGTACCTTATGTCAATCCTGCCTTTTTACCTGACACTCATTATTAACTTGGTGGTGGAGAGCAGCCCCACACTGGCCAATCTTGGACGGGTGGCCCAAGTGCTGAGGTTGATGAGAATCTTTCGGATCTTGAAGCTCGCCCGCCACTCAACTGGGCTCCGGTCCCTGGGAGCCACCCTAAAGAACAGCTACAAAGAGGTGGGCCTCCTGCTGCTTTATCTGTCAGTTGGGGTCTCTTTCTTCTCTGTGATGGCCTACACCATTGAGAAGGAAGATAACGAGGGGCTGACTACTATTCCTGCCTGCTGGTGGTGGGCGACAGTCAGTATGACCACAGTGGGTTATGGAGACGTGGTCCCTGGAACCATAGCAGTGCATGAGGAGCTTTATGTTGTCCGGTAG

Function

symbol description
kcns2 Predicted to enable voltage-gated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport and regulation of delayed rectifier potassium channel activity. Predicted to be located in perinuclear region of cytoplasm and plasma membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be integral component of membrane.

NR:

description
PREDICTED: potassium voltage-gated channel subfamily S member 2

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0016020 membrane cellular_component
GO:0005216 ion channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002681 True 873 mRNA 0.48 3 26136957 26138496

Neighbor

gene id symbol gene type direction distance location
AMCG00002673 osr2 coding downstream 131600 26002815 ~ 26005357 (-)
AMCG00002672 vps13b coding downstream 147394 25936202 ~ 25989563 (-)
AMCG00002674 LOC106594737,LOC104943785 coding downstream 314255 25788383 ~ 25822702 (-)
AMCG00002670 NA coding downstream 384343 25746083 ~ 25752614 (-)
AMCG00002671 vps13b,LOC104942627 coding downstream 460307 25647813 ~ 25676650 (-)
AMCG00002680 NA coding upstream 69774 26208270 ~ 26234043 (-)
AMCG00002679 NA coding upstream 104191 26242687 ~ 26260306 (-)
AMCG00002689 NA coding upstream 179847 26318343 ~ 26319376 (-)
AMCG00002687 laptm4b,LOC107702097,LOC107724295,LOC107394696,LOC107565197,LOC105907721 coding upstream 184402 26322898 ~ 26338157 (-)
AMCG00002690 NA coding upstream 225466 26363962 ~ 26375896 (-)
G125160 NA non-coding downstream 6495 26126554 ~ 26130462 (-)
G125075 NA non-coding downstream 524660 25610117 ~ 25612297 (-)
G125035 LOC108241327,LOC106932681,LOC103371419,LOC103151587 non-coding downstream 682959 25451215 ~ 25453998 (-)
G125036 NA non-coding downstream 703229 25374880 ~ 25433728 (-)
G124975 NA non-coding downstream 1186599 24948150 ~ 24950358 (-)
G125178 NA non-coding upstream 66396 26204892 ~ 26205871 (-)
G125200 NA non-coding upstream 103758 26242254 ~ 26242531 (-)
G125269 NA non-coding upstream 357453 26495949 ~ 26498450 (-)
G125291 NA non-coding upstream 517132 26655628 ~ 26655871 (-)
G125297 NA non-coding upstream 523208 26661704 ~ 26663029 (-)
G124848 NA other downstream 1797391 24291787 ~ 24339566 (-)
G124829 NA other downstream 1875134 24261565 ~ 24261823 (-)
G124719 NA other downstream 2840842 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other downstream 2944301 23181921 ~ 23192656 (-)
AMCG00002596 NA other downstream 4234360 21901292 ~ 21902597 (-)
AMCG00002682 NA other upstream 128556 26267052 ~ 26279621 (-)
AMCG00002688 NA other upstream 144844 26283340 ~ 26305923 (-)
AMCG00002694 NA other upstream 474980 26613476 ~ 26664767 (-)
AMCG00002705 klhl38a,LOC103030765,LOC106570780,LOC103376378,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC104967054 other upstream 716397 26854893 ~ 26875246 (-)

Expression


Co-expression Network