AMCG00002684 (rpl30,LOC107702100,LOC107568279)


Basic Information

Item Value
gene id AMCG00002684
gene name rpl30,LOC107702100,LOC107568279
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26275314 ~ 26279137 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002684
cgtaacaataatacaatgcaatttaaacaaCTCTTGCTTTGTAGCTTCCTTACAGAAACTTGCAGAAATTCGGAAACAGtaaaatgattgcattttacagttcctgaatgtaacaacaacaaaaagttgtACTCGCAGTAACCCTATCATATAATCTCGTATTTCGAACCACATAAGAAACTGAATTTGGCGCAGTGATCTTAACTTGCTCCCCAcaatcacacgcacacacggaAGAACTCGCTTCCTCTTTGTCATACCGCCTCTCGCGAGGATGGCCGAAATCTCTTAGAAGCGCTTTGCATGCTGGGAAGTCTTTCCTTTCCCTCTGCGGCCATTTTTGAGTTGCAAGTCTGGTTGGACCAGAACGGAGTGAACCGCGAAAATGGTCGCCGCCAAGAAAACGGTGAGTGGACTGCTGAGGATGGTATGGTGTGGCCGAAAAAGTCCCTGGAGTCCATAAACTCCCGGCTCCAGCTGGTGATGAAAAGTGGTAAATACGTGCTTGGGTACAAACAGACACTGAAGATGATCCGTCAGGGCAAAGCCAAGCTGGTCATCCTGGCCAACAACTGCCCTGCTCTGAGaaaatcCGAAATTGAATACTACGCCATGTTAGCCAAGACTGGAGTCCACCATTACAGTGGAAATAACATTGAACTTGGCACAGCCTGTGGTAAATACTACAGAGTATGCACACTGGCCATCATTGACCCTGGTGACTCGGACATCATCAGGAGTATGCCAGAGCAGCAGGGGGGCGAGAAGTAAATTCACATTTTCCcaaattgttataaataaatccagtgGAGAAAAACAACTTGTGGTGGTCATTTTTAATATGCTATGGTACTTTATGCCATGTGTACAAGTCTGTGGATTTGgcatatatattcaatatattggTTTATATGCCTAAACCAGTGTACCTGATGTTTGAAATAGTTGCATTCTATTTAAAACGGTCAAAACAGATGCTAgtttttcaaaagtaaattCCTTGCTATCCTGACATTTAAAGATATAGTAAATTGTAGacc
>TU156924
GCCGAAATCTCTTAGAAGCGCTTTGCATGCTGGGAAGTCTTTCCTTTCCCTCTGCGGCCATTTTTGAGTTGCAAGTCTGGTTGGACCAGAACGGAGTGAACCGCGAAAATGGTCGCCGCCAAGAAAACGAAAAAGTCCCTGGAGTCCATAAACTCCCGGCTCCAGCTGGTGATGAAAAGTGGTAAATACGTGCTTGGGTACAAACAGACACTGAAGATGATCCGTCAGGGCAAAGCCAAGCTGGTCATCCTGGCCAACAACTGCCCTGCTCTGAGaaaatcCGAAATTGAATACTACGCCATGTTAGCCAAGACTGGAGTCCACCATTACAGTGGAAATAACATTGAACTTGGCACAGCCTGTGGTAAATACTACAGAGTATGCACACTGGCCATCATTGACCCTGGTGACTCGGACATCATCAGGAGTATGCCAGAGCAGCAGGGGGGCGAGAAGTAAATTCACATTTTCCcaaattgttataaataaatccagtgGAGAAAAACAACTTGTGGTGGTCATTTTTAATATGCTATGGTACTTTATGCCATGTGTACAAGTCTG

Function

symbol description
rpl30 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; female organism; intestine; liver; and pancreas. Human ortholog(s) of this gene implicated in herpes simplex. Orthologous to human RPL30 (ribosomal protein L30).

NR:

description
60S ribosomal protein L30

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02908 RP-L30e, RPL30; large subunit ribosomal protein L30e

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002684 True 1040 mRNA 0.43 5 26275314 26279137
TU156924 False 564 TUCP 0.47 5 26275591 26278973

Neighbor

gene id symbol gene type direction distance location
AMCG00002683 rida,LOC102789025 coding upstream 34309 26234283 ~ 26241005 (+)
AMCG00002678 nipal2 coding upstream 76053 26183699 ~ 26199261 (+)
AMCG00002675 stk3,LOC107724280,LOC107702102,LOC105907728 coding upstream 199865 26064621 ~ 26075449 (+)
AMCG00002676 stk3,LOC100711192,LOC103135175,LOC106938036 coding upstream 230977 26041287 ~ 26044337 (+)
AMCG00002677 stk3,LOC103394381 coding upstream 244647 26026545 ~ 26030667 (+)
AMCG00002691 NA coding downstream 260032 26539169 ~ 26543912 (+)
AMCG00002692 NA coding downstream 357834 26636971 ~ 26648551 (+)
AMCG00002695 LOC108273070,LOC107702088 coding downstream 442649 26721786 ~ 26731801 (+)
AMCG00002696 LOC103376374 coding downstream 467027 26746164 ~ 26748406 (+)
AMCG00002698 NA coding downstream 487755 26766892 ~ 26776595 (+)
G125109 NA non-coding upstream 413008 25854158 ~ 25862306 (+)
G125022 NA non-coding upstream 818427 25456656 ~ 25456887 (+)
G125011 NA non-coding upstream 946453 25328180 ~ 25328861 (+)
G125005 NA non-coding upstream 972159 25299701 ~ 25303155 (+)
G124999 NA non-coding upstream 1136042 25138980 ~ 25139272 (+)
G125220 NA non-coding downstream 93442 26372579 ~ 26376125 (+)
G125288 NA non-coding downstream 374848 26653985 ~ 26655168 (+)
G125290 NA non-coding downstream 376102 26655239 ~ 26655457 (+)
G125296 NA non-coding downstream 382587 26661724 ~ 26662436 (+)
G125320 NA non-coding downstream 504645 26783782 ~ 26784610 (+)
AMCG00002661 znf706,LOC103394271,LOC100712275,LOC103364770,LOC106534503,LOC107088369 other upstream 891002 25374942 ~ 25384312 (+)
AMCG00002650 NA other upstream 1498499 24761884 ~ 24776815 (+)
G124863 NA other upstream 1852701 24422252 ~ 24422613 (+)
G124769 NA other upstream 2593929 23677935 ~ 23681385 (+)
G124689 NA other upstream 2984779 23152648 ~ 23290535 (+)
G125219 NA other downstream 83075 26362212 ~ 26369525 (+)

Expression


Co-expression Network