AMCG00002686 (ubr5,LOC102786672)


Basic Information

Item Value
gene id AMCG00002686
gene name ubr5,LOC102786672
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26395882 ~ 26452474 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002686
AGGTTACGGGAGGTCTCGGAGAAACTCAACAAGTACAACTTCAACAGTCATCCCCCTCTGAATGTGTTGGAACAGGCCACAATTAAACAGTGTGTAGTGGGACCAAATCATGCTGCTTTTCTTCTGGAGgatGGTCGCATCTGTAGAATTGGTTTTGCTGTCCAACCTGACAGGCTGGAGTTGGGTAAACCAGATGGCAGTGATGGttcaaaGTTGAGCAGTGGTTCAGGGACAGGAAGGACCTCCAGGCCAGGCAGGACTAGTGATCCGCCCTGGTTTCTGTCTGGTTCTGACACACTGGGCAGACTGGCAGGCAACACCCTTGGGAGTCGCTGGAGTTCCGGCGTGAATGGGGGAGGCGGCGGAGGGggcagtggtggtggtggcggaGGCGGCTCATCTGGCAGATCCTCTACAGCAGCCAGAGACTCCCGGAGGCAGACAAGAGTGATCCGTACTGGACGGGACCGTGGCTCCGGGCTCTTGGGGAGCCAGCCTCAGCCGGTCATTCCAGCCTCGGTCATTCCTGAGGAACTCATCTCTCAGgcacAGGTAGTTCTTCAAGGAAAGTCCAGGAGTGTTATCATTCGAGAGCTCCAGCGGACTAACCTGGATGTTAATTTGGCTGTTAACAACTTGCTGAGTCGTGATGATGAAGATGGAGATGATGGTGATGACACTGCAAGTGAATCATACTTACCTGGGGAGGACTTGATGTCTCTCCTGGATGCTGACATCCATTCTGCACACCCCAGTGTCATCATTGATGCAGACGCTATGTTTTCTGAAGACATAAGCTATTTTGGATACCCCTCCTTTCGCCGTTCGTCTCTCTCAAGACTTGGCTCCTCACGAGAGAGAGACTCGGAGCTGTTGCGTGAGCGTGAGTCTGTGTTACGTTTGCGTGAGCGGAGGTGGCTTGATGGAGCCTCTTTTGATACTGAGCGAGGCTCCACAAGCAGGGAAGGGGAGCCCAGCCTGGACAAGAAGAATATCCCAGTGCAGAGCCCTGTATCATTGGCAGAGGAACTTCAGTGGTGGCCTGATAAGGATGGTACAAAGTTTGTTAGCATTGGGGCCTTGTTCTCTGAGTTGGTGGCAGTGAGTTCAAAGGGAGAGCTCTATCAGTGGAAGTGGAGTGAAGCTGAACCATATAGAAATGCACAGaaCCCTGCTGTACATCATCCAAGGGCCACTTTTCTAGGGTTGACCAATGAGAAAATCACCCTCCTATCTGCCAACAGTATTCGAGCTACTGTGGCCACTGAAAGCAACAAGgTTGCAACATGGGTGGATGATACACTCAGCACAGTAGCATCTAAATTGGAGCACAGCACCCAGACCTTCACAGAGCTGCAAGGAGAGCGCATTGTATCCTTGCACTGCTGTGCTCTGTACACCTGTGCACAACTAGAGAACAGCCTGTACTGGTGggGTGTTGTGCCTTTCAGTCAGCGAAAAAAGATGCTTGAAAAGGCCAGAGCCAAGAACAAAAAGCCAAAGTCCAGTGCAGGCATTTCCTCAATGCCCAACATTACGGTGGGAACCCAGgTCTGTCTGAGGAACAACCCTCTTTACCATGCTGGTGCGGTGGCCTTTTCCATTAACGCTGGCATTCCTAAAGTTGGTGTGCTGATGGAGTCAGTGTGGAATATGAACGATAGCTGCAGATTCCAGTTGAGGTCACCCGAGAGCTTGAAAAACATGGAGAAGACTAGCAAGACTGCAGAAACAAAAACAGAGAACAAACCTGAGTCTGTGAAGACTGAAATGGGACCTCCTCCTTCCCCAGCCTCCACTTGCAGTGATACATCCTCTATTGCAAGCAGTGCATCACTTCCTTACAAGCGGCGACGCTCAACCCCAGCCCCTAAAGAAGAGGAGAAAGTAAATGAAGAGCAGTGGCCTCTGAGAGAAGTGGTGTTTGTGGAAGATGTTAAAAATGTCCCTGTTGGAAAGGTGCTAAAAGTCGATGGTGCATATGTTGCTGTGAAATTTCCAGGAACATCCAGCAGTGTGAGCAACCAAAGCACAACTCCTTCTGACTCTGATCCATCCTCACTGCTGCAGGACTGTAGACTACTAAGAATAGATGAGCTCCAGGTTGTAAAAACTGGTGGCACTCCAAAGGTTCCAGATTGCTTCCAACGCACACCTAAGAAACTCTGCATCCCTGAAAAAGCTGAAATACTAGCTGTGAATGTTGATTCGAAAGGTGTGCATGCTGTACTGAAGACTGGTAGCTGGGTGCGATACTGTATCTTTGATCTGGCAACAGGCAAAGCGgaacaggaaaataattttCCTACCAGCAGCCTTGCCTTCCTTGGCCAGAATGAGCGGAATGTTGCCATTTTCACTGCAGGGCAGGAATCACCTATCATTCTGAGGGATGGAAATGGAACAATTTACCCAATGGCTAAAGACTGCATGGGTGGCATACGAGATCCGGACTGGTTAGATTTGCCACCCATCTCAAGCCTTGGTATGGGAGTTCATTCCCTAACTAACCTTCCTGCTAACTCCACCATTAAGAAGAAAGCCgccataataataatggctgTTGAaaagcAAACCTTAATGCAGCATATTCTGCGTTGTGACTTGGAAGCGTGCAGGCAATATCTCATTAACCTGGAGCAGGCTGTTCTGCTGGAGCAGACCCCTCAAGCCTTAAATACACTCCTTGGGCACAGGTGTGATGGGAACCGCAATATACTGCACACCTGCGTGTCTGTTTGCTTCCCCATCAGCaacaaagaaactaaagagGAAGAAGaagctGAGCGATCAGAGAGGAACACCTTCGCAGAGAGGCTGTCTGCAGTGGAGGCCATAGCCAATGCGATCTCTGTGGTTTCTAGCAACAGCTCTGGAAATAGAACAGGATCATCCAGTAGCAGGGGCCTGCGGCTGCGAGAGATGATGAGACGTTCCTTGAGAGCTGCTGGTTTGGGTCGTCACGAGTCCGGGCCCTCCTCCAGTGACCACCAGGACCCCGTTTCCCCACCCATTGCCCCACCCAGTTGGGTTCCAGACCCGCCTCCCATGGACCCAGATGGTGATATTGATTTTATCCTGGCTCCTGCTGTGGGCTCCCTTACCACTGCTTCCACTGGAACTGGCCAGGGACCCAGTACCTCCACCATACCAGGACCTTCATCTGAGCCGTCAGTAGTGGAGTCAAAAGATCGTAAAGCCAATGCCCATTTGATTCTGAAATTGATGTGTGATAGTGTTGTTCTTCGTCCCTATCTCCGGGAATTGCTTTCTGCAAAGGATGCAAGAGGAATGACACCATTCATGCTGGCTGTTAGTGGGAGAGCATATCCAGCTGCTATTACCATCCTTGAAGCAGCCCAAAAAATAACCAAAGGTGACCCAGCTTCCAGCGAAAAGGAGGATGCCGTATTCATGGAAATGATCTGCCCATCTGGAACCAACCCAGATGACTCTCCTCTTTATGTTCTTTGCTGTAACGACACCTGCAGTTTCACATGGACTGGAGCTGAACACATTAATCAGGATATTTTCGAGTGCCGAACATGTGGCTTGTTGGAATCTCTCTGCTGCTGCACAGAGTGTGCCAGAGTTTGCCACAAGGGGCATGACTGCAAattgaaGAGAACATCTCCTACTGCGTACTGTGACTGCTGGGAGAAGTGCAAATGTAAAACCCTGATTGCTGGACAGAAATCGGCCCGTCTTGACCTGCTCTACAGACTTCTCACCACCACTAACCTTGTCACCATGCCAAACAGCAGGCAAGTACATAGCAGACACTTTGCAGGAGAGCATCTCTTATTGTTCTTGGTGCAGACGGTTGCCAGGCAGACTGTGGAACACTGCCAGTATCGGCCTCCAAGGATCAGAGAGGATAGAAACCGCAAGGCTGCAAATGCTGATGATTCAGACATGCCAGATCATGACCTGGAGCCACCCCGATTTGCCCAGCTGGCCCTGGAGCGTGTGCTGCAGGATTGGAATGCCCTCAAATCCATGATCATGTTTGGATCTCAGGAGAACAAAGACCCGCTTAGTGCGAGCAGCAGAATAGGTCACCTTCTTCCAGAAGAGCAGGTGTATCTGAACCAGCAGAGTGGAACAATCCGACTGGACTGCTTTACCCACTGTCTAATTGTGAAGTGCACTTCAGACATAACTctTTTAGATACGCTTTTGGGAACTCTGGTGAAAGAGCTTCAAAATAAGTACACTCCAGGTCgaagagaggaggccattaacGTCACTATGAGGTTCCTGCGCTCTGTGGCCAGGGTGTTTGTCATTCTCAGTGTGGAGATGGCTTcatcaaagaagaaaaataacTTTATACCCCAACCTATAGGGAAGTGCAAGCGTGTATTCCAGGCCTTGTTACCATATGCTGTGGAGGAATTGTGTAATGTGGCTGAATCGTTGATAGTTCCAGTGCGCATGGGCATTGCCCGCCCCACTGCTCCCTTCACCTTGGCTAGTACCAGCATTGATGCTATGCAGGGCAGTGAGGAGCTCTTCTCTGTCGAGCCACTGCCACCCAGACCCTCACCAGACCAATCCAGCAGCTCCAGCCAGTCTCAATCTTCATACATCATGAGGAACCCTCAGCAGAGGCGCATCAGCCAGTCACAGCCGGTCCGCGGGAGAGATGAAGAGCAGGATGATATCGTCTCTGCAGATGTTGAGGAGgtggaggtggtggagggggtggcAGGGGAAGAGGATCATCATGATGAGCAGGAGGAACAGGGGGAGGAGAATGCTGAGGCTGAGGGACAACATGATGAACACGATGAAGATGGCAGTGACATGGAACTTGATTTACTGGCAGCTGCAGAAACAGAAAGTGACAGTGAAAGCAACCATAGCAACCAGGACAATGCCAGTGGTCGAAGGAGTGTTGTCACAGCGGCTACTGCTGGCTCTGAAGCAGGTGCCAGCAGTGTCCCTGCCTTCTTTTCAGAGGACGACTCTCAGTCCAACGACTCGAGTGACTCGGACAGCAGCAGTAGCCAGAGTGATGATGTGGACCAGGAGACCTTCATGGTGGATGAGCCCCTGGAGAGGACCACCAGCACCTCCCATGCCAACAGCGCTGCCCAAGCCCCGCGCTCCATGCAACTAACAATTAGTCTCCcctctgtttgttttatctttgcAGCCAGCTCAACAGGGTTGATTTACATTGACCCCTCAAACCTGCGGAGAAGTGGTGCCATTAGTACCAGtgcagctgctgctgccgcAGCCCTGGAGGCCAGCAACTCTAGCAGCTACCTGACCTCAGCCAGCAGCTTGGCCAGGGCCTACAGCATTGTCATCCGTCAGATCTCTGACCTCATGGGCCTCATCCCTAAATACAACCACCTTGTATACTCCCAGATCCCTGCCGCTGTCAAACTCACCTACCAGGATGCTGTCAACCTACAGAACTATGTGGAAGAGAAGTTAATCCCCACATGGAACTGGATGGTGAGCATCATGGACTCCACTGAGGCTCAGCTGCGCTATGGCTCTGCATTACGTGCTGCCACTTTGCTTAGTGCTCGCCAGGGGATGATGTCAGCACGTGGAGACTTCCTAAATTACGCCCTATCTCTTATGCGCTCTCACAACGACGAACACTCTGATGTCCTGCCAGTGTTGGATGTTTGCTCTCTCAAGCATGTAGCCTATGTCTTCCAAGCACTTATTTATTGGATCAAGGCAATGAACCAACAGACCACACTGGACACGCCTCAGCTGGAGAGAAAGAGAACTCGTGAGCTGTTAGAGCTGGGACTGGACAATGAAGACTCGGAGCATGAAAATGATGAGGACACCAATCAGAGCTCCACTCTCCACGACAAAGATGAGGAAGCGGTCCCAGCAGAAACGGGCCAGAACCACCCCTTCTTCCGCCGCTCTGACTCCATGACTTTTCTGGGCTGCATCCCTCCAAACCCATTTGAAGTGCCCCTGGCAGAAGCCATCCCATTGGCTGACCAGCCTCACCTGTTACAGCCAAATGCAAGAAAGGAAGACCTTTTTGGACGCCCAAGTCAGGGTCTTTATTCCTCCTCATACAACACGGGCAAAGGACTTGCAGAAGTTACTGTGGACAGAAACTGTCTTGagGTTCTGCCTACTAAAATGTCTTACTCTGCGAACATGAAGAATGTGATGAGCATGCAGACTCGACAAAAGACTAGTGAGGAGCAGACTCTGCCTGAGGAAGAGCCTGAAAGCACAAAACCGGGACCCTCTGCACACGACCTGGCCGCACAGCTGAAGAGCAGCCTGCTAGCAGAGATAGGGCTGACTGAGAGCGAGGGCCCGCCACTCACCTCGTTCAGACCTCATTGTAGTTTTATGGGAATGGTGATATCCCATGACATGCTTCTGGGACGATGGCGTCTGTCTTTAGAACTTTTTGGACGAGTGTTCATGGAAGATGTTGGGGCTGAACCTGGATCGATCCTGACAGAGCTTGGTGGCTTCGAGGTGAAGGAATCCAAGTTCCGGCGGGAGATGGAGAAGCTTCGCAATCAGCAGTCCAGGGATCTGGCTCTGGAGGTGGACCGGGACCGAGACCAGCTCATCCAGCAGACCATGAGGCAGCTCAACACTCACTTCGGGAGGCGCTGCACTACCACTCCCATGGCTGTGCACAGGGTCAAAGTCACCTTTAAGGATGAGCCTGGGGAGGGCAGTGGGGTCGCACGCAGCTTCTACACAGCCATCGCCCAGGCCTTCCTGTCCAATGAAAAGCTACCCAATCTAGACTGTGTACAGAATGCCAGCAAAGGCATGCAGGCCAGCAATCTAATGCAGCGTCTGAGGAACAGAGACAGGGAGCGAGAGAGGAGGAGCGGTGGACTGCGAGCAGGTTCTCGTAGGGACCGGGACAGGGACTCCAGAAGGCAGCTCTCAATAGACACCAGACCCTTCAGACCAGCATCAGAAGGCAACCCCAGTGATGAACCTGACCCTTTGCCAGCCCACAGACAGGCTCTGGGAGAGAGGCTGTACCCACGAGTGCAGGCCATGCAGCCGGCATTTGCCAGCAAAATCACAGGAATGCTTTTAGAGCTTTCTCCAGCACAGCTCTTGTTGCTTTTAGCCAGTGAAGATTCATTGCGGGCCCGTGTAGAAGAGGCGATGGAGCTCATTATTGCCCATGGAAGaGAAAATGGTGCAGACAGTATATTGGATCTTGGACTGTTAGATTCATCAGATAAGTCACAGCAGGAAAACAGGAAGCGGCATGGCTCTAGTCGCAGTGTGGTGGACATGGAGTTGGATGACCCTGATGATGGGGACGACAACGCTCCTCTGTTCTATCAGCCTGGGAAGAGGGGCTTCTACTCTCCCCGACCAGGCAAGAACACAGAGGCGCGACTAAACTGTTTTCGTAACATCGGCAGAATTCTTGGGTTGTGCCTCCTGCAGAATGAATTATGTCCAATTACATTAAATAGACATGTTATCAAGGTCTTACTTGGTAGAAAGGTGAACTGGCATGATTTTGCATTCTTTGATCCTGTAATGTACGAGAGTTTGCGACAACTGATTCTGGCCTCTCAGAGTGCTGACGCGGAGGCTGTCTTTGCAGCTATGGATCTGGCCTTTGCTATTGACCTCTGTAAAGAGGAAGGAGGCGGACAGgtgGAACTTGTATCCGGTGGTGTAAATATACCAGTTACTCCTCTGAATGTATACGAGTATGTCAGAAAATATGCAGAACACCGGATGTTAGTTGTGGCAGAGCAGCCTCTACATGCAATGAGGAAAGGCCTTCTGGATGTGCTACCCAAGAACTCTCTTGAAGATCTTACTGCTGAAGATTTCAGGCTTCTTGTAAATGGCTGTGGAGAAGTCAACGTGCAGATGCTCATTAGCTTCACTTCCTTCAATGACGAATCAGgagaaaatgcagagaaattGTTGCAGTTTAAGCGCTGGTTCTGGTCCATTGTGGAGAAGATGAGCATGACTGAGAGACAAGACCTGgtTTACTTTTGGACATCAAGCCCGTCTTTGCCCGCCAGTGAAGAGGGTTTCCAGCCCATGCCATCCATCACAATACGGCCTCCTGATGACCAGCATCTGCCAACTGCAAACACCTGCATCTCCCGCCTCTACGTGCCACTATATTCCTCCAAACAGATTCTGAAACAAAAACTCTTACTAGCCATCAAGACCAAGAATTTTGGTTTTGTGTAGAATATAACAAGTGTTTATTGTTGTGTAATATTACTAGTTCCAGttttgtagatttattttttatttgtctatacaattttattaaatgaaatgctgtCACATCCCTGGCggtaacttttttttgtttcctgaaaaCATACATTCCTGCATGGGTTTGTAAGGTTAAAGCCCACAGCTCTTGGCTCTACCAGCTTTGACTGTAATCTCCCAGGTATTTGGCTAGGCAGTGAACTGTTAGCCTAACCCCAGCCAAAGATGACAGcagaaatatgtaattgttacactgtgattatgatttattttattttattttttgccctGAACGGAATACTTAATGTCACTGAAACTTCACTGCTGCCTTTGTGGAAagtctaaaaaaaataaaaaaataaaataatcttgtaTAGAGGGAGTAgggaatttcaaaataaacttgaGGATGcaaaatgttctttgtttttgttacaaaGTTGACTTCCGAGTGCGATTGCTACACTATATTAACAAAAGTGTAAATTCACTCATTAAACTGCATTGattttacatcacattttttgtttgtttttttaagttctgcctataattataaaaacc

Function

symbol description
ubr5 Predicted to enable several functions, including ubiquitin binding activity; ubiquitin-protein transferase activity; and zinc ion binding activity. Predicted to be involved in several processes, including negative regulation of histone H2A K63-linked ubiquitination; protein polyubiquitination; and regulation of double-strand break repair. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in invasive ductal carcinoma. Orthologous to human UBR5 (ubiquitin protein ligase E3 component n-recognin 5).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase UBR5-like isoform X4

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0043130 ubiquitin binding molecular_function

KEGG:

id description
K10593 EDD1, UBR5; E3 ubiquitin-protein ligase EDD1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002686 True 8799 mRNA 0.50 57 26395882 26452474

Neighbor

gene id symbol gene type direction distance location
AMCG00002685 rrm2b,LOC107556385,LOC108425040,LOC107394698,LOC106956493 coding downstream 4900 26382511 ~ 26390982 (-)
AMCG00002690 NA coding downstream 19986 26363962 ~ 26375896 (-)
AMCG00002687 laptm4b,LOC107702097,LOC107724295,LOC107394696,LOC107565197,LOC105907721 coding downstream 57725 26322898 ~ 26338157 (-)
AMCG00002689 NA coding downstream 76506 26318343 ~ 26319376 (-)
AMCG00002679 NA coding downstream 135576 26242687 ~ 26260306 (-)
AMCG00002693 NA coding upstream 143657 26596131 ~ 26608752 (-)
AMCG00002708 NA coding upstream 369491 26821965 ~ 26831030 (-)
AMCG00002707 kiaa0196 coding upstream 611287 27063761 ~ 27099867 (-)
AMCG00002704 kiaa0196 coding upstream 661731 27114205 ~ 27119264 (-)
AMCG00002709 esrp1,LOC107593677 coding upstream 688651 27141125 ~ 27141425 (-)
G125200 NA non-coding downstream 153351 26242254 ~ 26242531 (-)
G125178 NA non-coding downstream 190011 26204892 ~ 26205871 (-)
G125160 NA non-coding downstream 265420 26126554 ~ 26130462 (-)
G125075 NA non-coding downstream 783585 25610117 ~ 25612297 (-)
G125035 LOC108241327,LOC106932681,LOC103371419,LOC103151587 non-coding downstream 941884 25451215 ~ 25453998 (-)
G125269 NA non-coding upstream 43475 26495949 ~ 26498450 (-)
G125291 NA non-coding upstream 203154 26655628 ~ 26655871 (-)
G125297 NA non-coding upstream 209230 26661704 ~ 26663029 (-)
G125361 fam91a1,LOC106570778,LOC106589122,LOC107702086,LOC107724353 non-coding upstream 461233 26913707 ~ 26915965 (-)
G125376 NA non-coding upstream 525210 26977684 ~ 26977920 (-)
AMCG00002688 NA other downstream 89959 26283340 ~ 26305923 (-)
AMCG00002682 NA other downstream 116261 26267052 ~ 26279621 (-)
G124848 NA other downstream 2056316 24291787 ~ 24339566 (-)
G124829 NA other downstream 2134059 24261565 ~ 24261823 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other downstream 3203226 23181921 ~ 23192656 (-)
AMCG00002694 NA other upstream 161002 26613476 ~ 26664767 (-)
AMCG00002705 klhl38a,LOC103030765,LOC106570780,LOC103376378,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC104967054 other upstream 402419 26854893 ~ 26875246 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location