AMCG00002687 (laptm4b,LOC107702097,LOC107724295,LOC107394696,LOC107565197,LOC105907721)


Basic Information

Item Value
gene id AMCG00002687
gene name laptm4b,LOC107702097,LOC107724295,LOC107394696,LOC107565197,LOC105907721
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26322898 ~ 26338157 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002687
TTTAAACACGATTCTGAAGATGAATTCTCCTTGGGATCGATGGTACTCCAGTAGCTGCTGCCTGTGTTGTCATGTCCGAACAGGCACTATTATTCTGGGGATTTGGTACATGAGTATCAATGCAGTGGTGCTGCTCATTCTACTCACTGCCCTCAGCGATCCAGACCAATATCACTTGACCACAGTCGAGCTGGGAAATGATTTTGATGTCATGGATGATGCAAatatttgcattGCAACTGCAATCTCCCTCCTTATGATATTAATATGTGGAATGGCAACATATGGTGCATATAAGGAACATGCTGCTTGGATCATTCCATTCTTCTGCTACCAAATCTTTGACTTTGCTCTTAACACCTTGGTTGCAATTAGCGTTGTTGTTTACCCTAACACCATTCAGGACTACCTCCAGCAGTTGCCAGGGAATTTCCCATACAAAGAAGAAATCATGTCGATGAATGTCATGTGCTTGGTTCTCATTGTTCTCATCTTCATCGGTTGCATTCTGGCCTTCAAGGCCTACCTCATTGCCTGTGTATGGAACTGCTACAGATATGTCAGTGGAAGACAATCCACAGATGTGTTGGTGTACGTGACAACTAATGACACA

Function

symbol description
laptm4b Predicted to be located in cell projection; multivesicular body membrane; and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in lysosomal membrane. Is expressed in epiphysis; otic placode; otic vesicle; and retina. Orthologous to human LAPTM4B (lysosomal protein transmembrane 4 beta).

NR:

description
PREDICTED: lysosomal-associated transmembrane protein 4B-like isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K12387 LAPTM; lysosomal-associated transmembrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002687 True 613 mRNA 0.43 6 26322898 26338157

Neighbor

gene id symbol gene type direction distance location
AMCG00002689 NA coding downstream 3522 26318343 ~ 26319376 (-)
AMCG00002679 NA coding downstream 62592 26242687 ~ 26260306 (-)
AMCG00002680 NA coding downstream 88855 26208270 ~ 26234043 (-)
AMCG00002681 kcns2,LOC102221451 coding downstream 184402 26136957 ~ 26138496 (-)
AMCG00002673 osr2 coding downstream 317541 26002815 ~ 26005357 (-)
AMCG00002690 NA coding upstream 25805 26363962 ~ 26375896 (-)
AMCG00002685 rrm2b,LOC107556385,LOC108425040,LOC107394698,LOC106956493 coding upstream 44354 26382511 ~ 26390982 (-)
AMCG00002686 ubr5,LOC102786672 coding upstream 57725 26395882 ~ 26452474 (-)
AMCG00002693 NA coding upstream 257974 26596131 ~ 26608752 (-)
AMCG00002708 NA coding upstream 483808 26821965 ~ 26831030 (-)
G125200 NA non-coding downstream 80367 26242254 ~ 26242531 (-)
G125178 NA non-coding downstream 117027 26204892 ~ 26205871 (-)
G125160 NA non-coding downstream 192436 26126554 ~ 26130462 (-)
G125075 NA non-coding downstream 710601 25610117 ~ 25612297 (-)
G125035 LOC108241327,LOC106932681,LOC103371419,LOC103151587 non-coding downstream 868900 25451215 ~ 25453998 (-)
G125269 NA non-coding upstream 157792 26495949 ~ 26498450 (-)
G125291 NA non-coding upstream 317471 26655628 ~ 26655871 (-)
G125297 NA non-coding upstream 323547 26661704 ~ 26663029 (-)
G125361 fam91a1,LOC106570778,LOC106589122,LOC107702086,LOC107724353 non-coding upstream 575550 26913707 ~ 26915965 (-)
G125376 NA non-coding upstream 639527 26977684 ~ 26977920 (-)
AMCG00002688 NA other downstream 16975 26283340 ~ 26305923 (-)
AMCG00002682 NA other downstream 43277 26267052 ~ 26279621 (-)
G124848 NA other downstream 1983332 24291787 ~ 24339566 (-)
G124829 NA other downstream 2061075 24261565 ~ 24261823 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other downstream 3130242 23181921 ~ 23192656 (-)
AMCG00002694 NA other upstream 275319 26613476 ~ 26664767 (-)
AMCG00002705 klhl38a,LOC103030765,LOC106570780,LOC103376378,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC104967054 other upstream 516736 26854893 ~ 26875246 (-)

Expression


Co-expression Network