AMCG00002688


Basic Information

Item Value
gene id AMCG00002688
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26283340 ~ 26305923 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002688
atggaCAGCTCTGAGATCCTGAGTGACAGAGatgctgattttgtttctcatgtcAAGAATGAAAGTCCATGTAAAGGGAAGCCTCTGGATTTTGTATTCATCATTGACAGCTCCCGCAGCGTGCGTCCTGATGACTATGAGAAAGTCAAGACCTTCATCATCAACATTCTGAGGTTCCTGGATGTGGGGCCTGATGCCACCAGGGTGGGCCTTATCCAGTATGGCAGTATTGTACAGAACGAGTTCTCCCTAAACACCTTCAAGAAGAAGGCCGATGTAGAGAATGCTGTGCGGAACATGATCCACCTGGCCAGTGGCACCATGACAGGCCTGGCCATCCAGTACACCATGAACGTGGCCTTTTCCAAGGCTGAGGGGGCGCGGCCATTGGACATGCACATTCCACGCATTGCCATGATTGTCACTGACGGCCGTCCCCAGGACATGGTGACAGAAGTGTCTGCCAAGGCTAGGGAATCTGGCATTCAGATGTTTGCCATCGGCGTGGGCAGAGTTGATATGAGCACACTGCGTGCCATTGGGAGCGATCCCCATGATAACTATGTATTTCTAGTGGCGAATTTCAGCCAGATCGAGACCCTGACCTCTGTGTTCCAGTCCAAACTATGTGGAGGAATGGACTATTGTGATCTGGGGAACCACGGCTGTGAGCATGACTGTCTGAGCACTGGGACATCCTACATCTGCAGATGCCAGAGAGGGTTCATCCTCAACACTGATGGGAAGACCTGCAGGAGAGAAGACATCTGTGCAATGGGCCTCCATGGCTGTGACCATGAATGTGTTAACATTGAAGACTCCTACATCTGCCGCTGCAGCAAGAGCTATCTGCTAAACCCTGATAGGAAAACCTGCAGAGAGATTGACCATTGCACTTTGGGAAACCATGGCTGTGATCACGAGTGTGTTAACTCTGAAGAGTCCTTTGTGTGTAGATGCTATGCAGGCTACACACTTAACCCAGATGGCAAAACATGTAAAAGAGTTGATCACTGTGCTGTGAATGGCCATGGCTGTGAGCACTTGTGCCTGAACACTGACGAGTCCTTTATCTGCCAGTGCTATGAGGGATATATATTGAATGATGATTTAAAATCCTGCAACAGAATGGATTACTGTGCTGTGAATGCCAATGGTTGTGAGCATTTTTGTGTGAACACAGACAAGTCTTACGTATGCCAGTGCTTTGAGGGATATATGCTTAATGATGATGGGAAAACCTGTAGAAAGTGTGCTGATGGAGTAATTGACCTTGTATTTGTGATCGATGGTTCTAAAAGCCTGGGCCCCTCTAACTTTGAGCTAGTGAAGAAGTTTGTGAATGGGATTGTGGAATCCCTGGAGATCTCCCACATGGCAACCCATGTAGGACTGCTGCAGTACTCCACCAAGGTGCGGACAGAGTTCACCCTGGCTCAGCACAGTTCCAGTGAGGAGGTGAAGAAGGCTGTGGCACAGATGCAGTACATGGGCCGAGGCTCCATGACAGGCAGTGCACTCCGCCACATGTTTGAAAACAGCTTCACCACAACAGAAGGGGCAAGGCCACCATCTGCAAAGGTGCCCAAAGTTAGCATAGTATTCACAGATGGCCGATCTCAAGATGACGTCTTGGAATGGGCGACTAAAGCTCAGGAGGCTGGCATTGCTATGTACGCTGTTGGAGTTGGCAAAGCCATAGAAGATGAGCTACGAGAAATTGCATCAGAACCTGACGACAAACACTTATATTATGCTGAAGACTTTACCAATATGGGTGAAATTGCAAATAAGCTGATGTCACAGATTTGTGAA
>TU156949
GTCTTTCCCATGCAGGGTTTTCTTCTGTGAAATTGCCTTGTTTAAGaagtattgttttcttctttgattgtttttttcagttggaCTGTCTTCATTTTcatggaaatgaaaacatctgTAATTAGCCTGTTTTTGCTCCTCTGTTGGCAAACTGTGTTGGGGGATTCCCAGGAGAAACAACGCTCTCATAAGCCTATGATCAGAGGAAGGGATGACCCTGTTCTGCAGTCCAATCTGCTGGAAAGTCCATGTAAAGGGAAGCCTCTGGATTTTGTATTCATCATTGACAGCTCCCGCAGCGTGCGTCCTGATGACTATGAGAAAGTCAAGACCTTCATCATCAACATTCTGAGGTTCCTGGATGTGGGGCCTGATGCCACCAGGGTGGGCCTTATCCAGTATGGCAGTATTGTACAGAACGAGTTCTCCCTAAACACCTTCAAGAAGAAGGCCGATGTAGAGAATGCTGTGCGGAACATGATCCACCTGGCCAGTGGCACCATGACAGGCCTGGCCATCCAGTACACCATGAACGTGGC

Function

GO: NA

KEGG:

id description
K19467 MATN; matrilin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002688 True 1815 mRNA 0.49 9 26283340 26305661
TU156949 False 539 TUCP 0.47 2 26303882 26305923

Neighbor

gene id symbol gene type direction distance location
AMCG00002679 NA coding downstream 23034 26242687 ~ 26260306 (-)
AMCG00002680 NA coding downstream 49297 26208270 ~ 26234043 (-)
AMCG00002681 kcns2,LOC102221451 coding downstream 144844 26136957 ~ 26138496 (-)
AMCG00002673 osr2 coding downstream 277983 26002815 ~ 26005357 (-)
AMCG00002672 vps13b coding downstream 293777 25936202 ~ 25989563 (-)
AMCG00002689 NA coding upstream 12420 26318343 ~ 26319376 (-)
AMCG00002687 laptm4b,LOC107702097,LOC107724295,LOC107394696,LOC107565197,LOC105907721 coding upstream 16975 26322898 ~ 26338157 (-)
AMCG00002690 NA coding upstream 58039 26363962 ~ 26375896 (-)
AMCG00002685 rrm2b,LOC107556385,LOC108425040,LOC107394698,LOC106956493 coding upstream 76588 26382511 ~ 26390982 (-)
AMCG00002686 ubr5,LOC102786672 coding upstream 89959 26395882 ~ 26452474 (-)
G125200 NA non-coding downstream 40809 26242254 ~ 26242531 (-)
G125178 NA non-coding downstream 77469 26204892 ~ 26205871 (-)
G125160 NA non-coding downstream 152878 26126554 ~ 26130462 (-)
G125075 NA non-coding downstream 671043 25610117 ~ 25612297 (-)
G125035 LOC108241327,LOC106932681,LOC103371419,LOC103151587 non-coding downstream 829342 25451215 ~ 25453998 (-)
G125269 NA non-coding upstream 190026 26495949 ~ 26498450 (-)
G125291 NA non-coding upstream 349705 26655628 ~ 26655871 (-)
G125297 NA non-coding upstream 355781 26661704 ~ 26663029 (-)
G125361 fam91a1,LOC106570778,LOC106589122,LOC107702086,LOC107724353 non-coding upstream 607784 26913707 ~ 26915965 (-)
G125376 NA non-coding upstream 671761 26977684 ~ 26977920 (-)
AMCG00002682 NA other downstream 3719 26267052 ~ 26279621 (-)
G124848 NA other downstream 1943774 24291787 ~ 24339566 (-)
G124829 NA other downstream 2021517 24261565 ~ 24261823 (-)
G124719 NA other downstream 2987225 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other downstream 3090684 23181921 ~ 23192656 (-)
AMCG00002694 NA other upstream 307553 26613476 ~ 26664767 (-)
AMCG00002705 klhl38a,LOC103030765,LOC106570780,LOC103376378,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC104967054 other upstream 548970 26854893 ~ 26875246 (-)

Expression


Co-expression Network