AMCG00002705 (klhl38a,LOC103030765,LOC106570780,LOC103376378,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC104967054)


Basic Information

Item Value
gene id AMCG00002705
gene name klhl38a,LOC103030765,LOC106570780,LOC103376378,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC104967054
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26854893 ~ 26875246 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002705
CTTGCACATACTATTAATAACATTGGAATGTATACAGTGGCCTCATGGCAAGCACCAACAACAATAGTCAGACTGCCTTCTTCATAAACACATCCACCTCTCATTACCAATAGTGTacttagtaaaaaaataaaaagaacaaaaaagtatttgttacTTGTTTTCTGAAATTTCTTAAGTGGAAGAAGATTGTCAGGAAAACCTGGATGCTCTGTATAAACAGTGAGAATGGACAAGATACAAGAGGCCTTTCATTTTAAGGATAAAGAGCATTCATCTAATCTTCTCTCAGAGTTGAACAGATTAAGACAAGAAAGAATTCTCACAGATGTTTTTCTATGCTCAGAATATGAAGAAATACCCTGCCACAGAAATGTTCTGGCTTCCAGTAGTCCTTATTTTAGGGCAATGTTTTGCAGCAATTTCAAAGAAAGCCAGCAGGACAAAATAGACTTGAGAGGTATTACATCAAATGTTCTCAGCCTTATAGTAGACTTTGTGTACACAGGGAACATAACCATTAAAATGGACCTGGTATTGCCACTGATGCAGGGTGCATCTTTGCTCCACTATCCACGGTTATTTGAGGCCTGTTCTTCATTCCTTCAAGAACAATTAAGCCCAGAAAACTGTTTGAGCATGATCCGGTTATCTGAAATCTTGGACTGTGAGAGTCTAAGGAAGAAGGCAAAGGAGATGGCAGTGCGAAGTTTCTCAGATGTGGCTGCATCAGAGGATTTTCAAGAGCTGTCTTTACCTGAGTTGGAGTGCTATCTAGAGGATGACCAGCTGTGTGCAGAAGAGGAGCAAGTCTTTGAAACCCTAGTGGCTTGGATTCACCATGACCCTTTCTCTAGGAAAAGCGCAATCCACAACTTGTTCAAGAAGGTACGACTTAGGTATATACATCCAACCTACTTATTCCAATTCATAGCTAATGATCCCCTTATTCAGTCTTCCCCTCTCTGCACAGACATAATAGAGTCAGTAAGAAGACTGATGTTCTCTGTGAGCACAAAGTGTACACGAGAATTGAAGCCTCTGTGGGTGACCCCACGCCGGTACACCTGCCATGAGACTCTTGTGGTTGTTGGTGGTAGAAAGAACAACCAGCAGACAACTAGGGAGGCTCTGCTGTATGATGAAAGGACTCAGCGTTGGCAATGGCTAGCAAAGCTCCCTCTCAGGCTCTATAAAGCCTCTTTTGTGTGTATTCACAGCATTCTGTATGTACTGGGTGGCCTGATCATAAACAGTGGAGACAGCATTGTCAGTCCCAAAGTCTACACATTTTCTCTCAAAGCAAACCAGTGGAGGACAGCTGAGCCTATGCTTGAACCACGTTACGCACACCAAAGTGTCTCATACCTGAACTGTATCTTTGTCTTTGGAGGCATTGGGCCAGTCAGGCAAGTTTCCAATACTGTGGCGAGATACAACAGCATGTTTAACCTCTGGGAAGCCATGGCACCCATGCCTACAGCTGTTCTACACCCAGCTGTGGCTGCTACAGACCAAAGAATCTATATTTTCGGAGGAGAGGATGTGATGCAGAACCCTGCCAGATTGATACAGATATATCATGTTTCTAGAAATATGTGGTGCAGACTGGAAACCAGGATGGTTAAGAATGTATGTGCACCTGCAGCTGTGATTGAAGACAAAATCTATATCATTGGAGGGTACACAAGAAGAATGATAGCCTAtgacacaaaatcaaacaaatttgtaaaatgtgcacAAATGAAGGAAAGAAGAATGCACCATGGAGCCACAGTGATCAACAATAACTTGTATGTGACTGGCGGTCGCTACATCAGTAACCATAATGTTATAGAAGACTCTGATTGTTTTGACTGCTATGACCCCAAAGCAGATGTATGGACCTCTAAAGGGACACTGCCTTACAAACTCTTTGACCATGGCTCTGTTCCTCTGATTTGTGTCTCCAACAAAGGAAACCCACCATAATTTCTTACTCTTAGCAAATATCTGTTTAATTCTTACAGATTTTGAAAGAAAGTAAACAGCAAttcattgtttatttggttgtttacttaaataattacatgttgtacagtatttttcctttggtatttttttcattactttgatattacatttttcctgAATTTGCTGCTATTATGGATAGGAAAATGGTAGGGCCTGCAGTGTGTCTTAAGAGAAACTAAGTGCATGCTTTGTATCACATTATCTAAAGAGAGTGTGCTAATGTGAATACTTTGTGTTCACATTTACTCttattcaaaaatgtgtttatcattTATGCACCTGTCTGTCTCACCAAAACTCAAATCCATTGAGAATCCAAATAAATGAATCTGCTGATCATCTTTCTATACATAAGaatataataaagtttacaaacgagagtaGGCCATtagacccatcatgctcatttggtgtccattaataactaagtgatccaaggatcctatccagtctatttttaaatgttgctggagagtttgttccagatcaTAATAActttttgtgtgaagaagtgtctcctgttttctgtcttgtatgctttgaagcccaatttccatttgtgtccccggatGTGTGTGtacctgctgatctggaaaagctcctc
>TU157116
CTCACACTGGACATTAGCAGCTGACTATATTTACAGACTTCCCCAGTTACACAACCTATTGGACTGCTGTATAATTTCCAAACTGAAGGCCAGCTCCTTGAATAGCTCAAAGTTCATCTGGGTCTCTGTTTATACCAttgtaaacacacagaaacatggaCTGGAATATGCTCAAGGATGAGGAACAAGCTCATGTCACAAAAACAAGGGGAGAGACACATGATCTTGCTGGAGAGTTCTTGCACATACTATTAATAACATTGGAATGTATACAGTGGCCTCATGGCAAGCACCAACAACAATAGTCAGACTGCCTTCTTCATAAACACATCCACCTCTCATTACCAATAGTGTacttagtaaaaaaataaaaagaacaaaaaagtatttgttacTTGTTTTCTGAAATTTCTTAAGTGGAAGAAGATTGTCAGGAAAACCTGGATGCTCTGTATAAACAGTGAGATATATCATGTTTCTAGAAATATGTGGTGCAGACTGGAAACCAGGATGGTTAAGAATGTATGTGCACCTGCAGCTGTGATTGAAGACAAAATCTATATCATTGGAGGGTACACAAGAAGAATGATAGCCTAtgacacaaaatcaaacaaatttgtaaaatgtgcacAAATGAAGGAAAGAAGAATGCACCATGGAGCCACAGTGATCAACAATAACTTGTATGTGACTGGCGGTCGCTACATCAGTAACCATAATGTTATAGAAGACTCTGATTGTTTTGACTGCTATGACCCCAAAGCAGATGTATGGACCTCTAAAGGGACACTGCCTTACAAACTCTTTGACCATGGCTCTGTTCCTCTGATTTGTGTCTCCAACAAAGGAAACCCACCATAATTTCTTACTCTTAGCAAATATCTGTTTAATTCTTACAGATTTTGAAAGAAAGTAAACAGCAAttcattgtttatttggttgtttacttaaataattacatgttgtacagtatttttcctttggtatttttttcattactttgatattacatttttcctgAATTTGCTGCTATTATGGATAGGAAAATGGTAGGGCCTGCAGTGTGTCTTAAGAGAAACTAAGTGCATGCTTTGTATCACATTATCTAAAGAGAGTGTGCTAATGTGAATACTTTGTGTTCACATTTACTCttattcaaaaatgtgtttatcattTATGCACCTGTCTGTCTCACCAAAACTCAAATCCATTGAGAATCCAAATAAATGAATCTGCTGATCATCTTTCTATACATAAGaatataataaagtttacaaacgagagtaGGCCATtagacccatcatgctcatttggtgtccattaataactaagtgatccaaggatcctatccagtctatttttaaatgttgctggagagtttgttccagatcaTAATAActttttgtgtgaagaagtgtctcctgttttctgtcttgtatgctttgaagcccaatttccatttgtgtccccggatGTGTGTGtacctgctgatctggaaaagctcctctggtttgatgtggtcgatgccttccatgattttgaagacttgaatcaagtccccatgtagtctcctctgttccagagtgaaaaggttcagttccctcagtctctccgagtaggactttcccttcaaacctggaataagtctggttttTCGACTCTGAATTGCCACTAGAGCAGCaatttcttgaagtgtggtgcccagaattATGTATAAGCCTATGCACTGTTTTGCAGTATGCCATTTAAAGTATGCAACTTTTCATACCTACAATATATTAACCAAAATGTATAAACCCTTAAATCAACATTTACAGACatcacaaaaatgtttattttacattttgttttaccttgTCTGACTAATTGAAAGGTAAACTTTAGAAATCTACTTTTGTATCAAGttctctcctctcacatgaagtgaagaaaataactaaggATGGGAGTTGGAGAACTTGCAACAAACAAGCTTCACACCtgtacaaaagacaaaacaaaacagagaaaactacttttattgttttacttttgaagAACAATACTCAACCTCAGATTTAAGATAAGTGTACCTAATCTACTGTTTCAGATCTGAACCACTGACTCCCGTATTCTGCTCTGtccttgttttaaatgctaAGCATGTGTACCGCTGTCTTACCTACATAGGTCAGTAATAGTATCCAGCCATGATCACATTCTTTCTACAGCATACAGGTAGCAGATTAAAGCCatgcatatattaatttatctaaGAGAGCATCATTTCAGCActgggttaaaataaaatgcctagAGCAATAGaacaataaaagtatttgataaatCAATTATTCATTGGGAAGAAAGGGattaataaattgtttattgCTTACATTTACAGAGCTTAAATTATGACAGTTATAACTTGCTTGcacaatcaaattaatttgtacaatCAAGACTAATTTATAAACGGATTTAGTAACATTGACAAATGCATTTATCAATGGTTATAAAGTGATAAATCCTTAGTAATGTGGTTAATAAACTAGAAATAGTGGCATTAATAAAGTATCTGTTCATGATTGTAACTTATTTGTTCATACTTTATAAATGAGTTCATCATCTGTTAAGgcttcataaagcatttatatggggaccttattataaagtgctaACCCATCGGCttatattaccctgaatacccacagtttccaattttaggatcagtctttagtgtggaaccttgtcaaaaactttctgaaaatctaagtatatcatatcatatgccatatctacagctgcagttatatgttcaaaaaactctaaaaaattattaagacatgatctgccttgtctaaatccatgttgactatcaacccgaatatggttttcaattaagatgctcctctattttctgtctaatcattttttcaaaaATTGTACACGTAATGCAGGTgaaactgattggtctgtaattttctggctcagttttgtcccctttctggTGGATAgttatgacatttgcagttttccaatcagttggcacatcccctgttctaagtgtcatttggaatattttaaatgatgtaaataacctttaaatgattattttaatttctataagTACTATTGGAAATATActatctggcccaggtgatttgtttgtttttaattctgctaatccctttaatacctcctcctcatttatccggATATCTGatagagtttgactggactgattgtttacctgtggcatgttatctgttttttcttttgcaaaaacttctgtgaaatactcgtttagaacatttgacacatcttgttcattttctaagatacttcaatttttagcttttagctgtttcacttcctcctttattgacctcttgctgttgaaaaaagctctttgcattagttttagctccaagagctgtttctttctatttccctcatTGTTTTCCTGATCCCTATCTTAACACCcttttgcagttctatatattctttgtttttgtttcagctcTATTTCTTAATactttttgcatacttctattaaacaattttggccaatgttttttggtcctcaatttgttttttgtcctcaagttttggtacagatttctcctgagcctcaagtagtatatacttgaaatataaacatccatttatatttatatttatatctatccatcaactgaatctgtatacAGTGTGGCCCAGTCTAactctaagtgctgcctcataccttctaAAATTGTAtaccattgttttattaaagtatgcctcaaaactcatcatattgtgatcacagtttgccattggttctctaactagtgtccctctgactctatatttgtcatttgaaaagatcaaatcaatgcatgctctctctctggttggttccctgacagatttaccatctcaaccatttctatttctgcttctgtagtcccaactgggctaagtttgggaaatttaaatccttgctacatgcagtcctg

Function

symbol description
klhl38a Orthologous to human KLHL38 (kelch like family member 38).

NR:

description
kelch-like protein 38

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002705 False 2617 mRNA 0.40 4 26857369 26875008
TU157116 True 3983 TUCP 0.35 3 26854893 26875246

Neighbor

gene id symbol gene type direction distance location
AMCG00002708 NA coding downstream 23863 26821965 ~ 26831030 (-)
AMCG00002693 NA coding downstream 246141 26596131 ~ 26608752 (-)
AMCG00002686 ubr5,LOC102786672 coding downstream 402419 26395882 ~ 26452474 (-)
AMCG00002685 rrm2b,LOC107556385,LOC108425040,LOC107394698,LOC106956493 coding downstream 463911 26382511 ~ 26390982 (-)
AMCG00002690 NA coding downstream 478997 26363962 ~ 26375896 (-)
AMCG00002707 kiaa0196 coding upstream 188515 27063761 ~ 27099867 (-)
AMCG00002704 kiaa0196 coding upstream 238959 27114205 ~ 27119264 (-)
AMCG00002709 esrp1,LOC107593677 coding upstream 265879 27141125 ~ 27141425 (-)
AMCG00002706 NA coding upstream 365090 27240336 ~ 27244422 (-)
G125297 NA non-coding downstream 191864 26661704 ~ 26663029 (-)
G125291 NA non-coding downstream 199022 26655628 ~ 26655871 (-)
G125269 NA non-coding downstream 356443 26495949 ~ 26498450 (-)
G125200 NA non-coding downstream 612362 26242254 ~ 26242531 (-)
G125178 NA non-coding downstream 649022 26204892 ~ 26205871 (-)
G125361 fam91a1,LOC106570778,LOC106589122,LOC107702086,LOC107724353 non-coding upstream 38461 26913707 ~ 26915965 (-)
G125376 NA non-coding upstream 102438 26977684 ~ 26977920 (-)
G125415 NA non-coding upstream 256640 27131886 ~ 27197333 (-)
G125473 NA non-coding upstream 490216 27365462 ~ 27365663 (-)
G125474 NA non-coding upstream 493362 27368608 ~ 27368869 (-)
AMCG00002694 NA other downstream 190126 26613476 ~ 26664767 (-)
AMCG00002688 NA other downstream 548970 26283340 ~ 26305923 (-)
AMCG00002682 NA other downstream 575272 26267052 ~ 26279621 (-)
G124848 NA other downstream 2515327 24291787 ~ 24339566 (-)
G124829 NA other downstream 2593070 24261565 ~ 24261823 (-)

Expression


Co-expression Network