AMCG00002707 (kiaa0196)


Basic Information

Item Value
gene id AMCG00002707
gene name kiaa0196
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 27063761 ~ 27099867 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002707
TATGATCCAAACAACAAGAGGCTGCGTCAAATAAAGGATCAAGTAATCAGTGACTCAAAATACAACTCCAAGATTCTCTTCCAGCTATTGCTGGACACAGCCCAGTTTGAGTTTATTCTGAAggagATGTTCAAACAGATGCTCTCTGAGAAGCAAATGAAGTGGGAGAATTATAAGAAAGAGGGATCTGAGAGAATGACAGAGCTGGCTGAGGTGTTCTCTGGGGTAAAACCCCTAACCAGGGTAGAGAAGAATGAGAACCTGCAAGCATGGTTTAGAGAGATTTCAAAGCAGATCTTGTCTCTGAATTATGAGGACTCCACAGCTGCTGGGAGGAAGACTGTGCAGCTAATCCAGGCCCTAGAGGAGGTACAGGAGTTCCACCAGCTTGAATCCAATCTACAGGTCTGCCAGTTTCTTGCAGACACCCGCAAATTTCTCCACCAGATGATCCGTACCATCAATATCAAGGAGGAGGTCCTGATCACAATGCAAATTGTGGGGGATTTGTCTTATGCCTGGCAGCTCATCGATAGCTTCACAAGTATCATGCAAGAGAGCATAAGGGTTAACCCATCAATGGTGACAAAACTCCGAGCCACATTCCTGAAGtTGGCGTCCGCTCTGGACCTGCCCTTGCTGAGGATTAACCAGGCCAACAGTCCTGATCtgctcagtgtgtctcagttcTACTCTGGGGAGCTCGTGGCATATGTCCGGAAGGTGTTACAGATCATTCCTGAGAGTATGTTCACCTCACTGGCCAAAATTATAAAGCTGCAGATACATGACATCATGGAAGTACCGACACGGCTGGACAAGGACAAGCTAAAGGATTATGCCCAACTGGGTGCACGCTACGAGgttGACCCTAAGCAATTGCTTGAGGATGGTATAAGGAAAGAGTTGGTGAGGAGAGTTGCTTTTGCCCTTCATAAGGGTCTTATCTTTAACCCCAAAGCTAAGACCAGTGAATTGATGCCTAAGCTAAAGGACATGGCTGCTACAATGGATGGGTTCTATCGTTCATTTGAATATATTCAGGATTATGTCAGTATCTATGGACTTAAAATCTGGCAGGAGGAGGTGTCACGAATAATTAACTACAATGTGGAGCAGGAGTGCAACAGCTTTCTCAGAACAAAGATTCAAGATTGGCAGAGTGTATACCAATCAACCCACATTCCAATTCCAAAATATTCTCCTGTGGATGAGTCTGCAACATTCATTGGACGTCTTTGTAGAGAGATTCTAAGGATCACTGACCCAAAagtcACTTGTTATATAGATCAGATGAACACATGGTATGACATGAAATCACATCAAGAGGTGACCAACAACAGACTGTTTTCAGAGATTCAAGACACACTGGGAACATTTGGACTAAATGGTCTTGACAGACTTCTCTGTTTTATGATTGTGAAGGAGATACAGAATTTCTTGAACATGCTCCAGAAGACAATCCTCAGAGATAGAACTGTAGTTGACGTTTTCAAAGCTTTGCTGAATTCTGTAAATCCTGTGAAAGGGATTGTTGGAAATGCAAGCAAAGTCTACTCCACAGCTGttgcaaaaacacagaaaatctgGACATCGTATTTGGAGGCCATTCTTAAGGTTGGACAGATGCAGATCCTAAGGCAGCAGATTGCAAATGAATTAAACTACTCATGCAAGTTTGACTCCAAGCATTTAGCTGCTGCTCTGGAAAATCTCAATAAGTCCCTTCTTGCTGATATTGAAGCCCATTATCAGGACCCCTCACTGCCATATCCCAAGGAGGACAACACCCTCCTGTGTGAAATCACTGCATACCTAGAGGCTGCTGGGATTCACAATCCTCTCAATAAACTTCCCAAATTACAGTACAGCAAAAACCAAGGGATGACCTGCAGAAAGTCGACTGATCCTGTAGACTGGCCTCCCCTTGTCCTGGGTCTCCTCACCTTGCTAAAGCAGTTTCATTCCAGATACACAGAGCAATTTCTTGCTTTAATTGGACAATTCATCCGCTCCATAATGGAACAGTGTACAAGTCAGAAGATTCCAGAAATGCCATCTGATGTAGTGGGGGCTCTTATGTTCCTGGAGGATTATGTTCATTATACTAAACTACCACGAAAGgtgGCCGAAGCCCATGTACCCAGTTTCATCTTTGATGAATTTAGGACTATCCTG

Function

NR:

description
PREDICTED: WASH complex subunit strumpellin

GO: NA

KEGG:

id description
K18464 RTSC, SPG8; WASH complex subunit strumpellin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002707 True 2178 mRNA 0.44 19 27063761 27099867

Neighbor

gene id symbol gene type direction distance location
AMCG00002708 NA coding downstream 232731 26821965 ~ 26831030 (-)
AMCG00002693 NA coding downstream 455009 26596131 ~ 26608752 (-)
AMCG00002686 ubr5,LOC102786672 coding downstream 611287 26395882 ~ 26452474 (-)
AMCG00002685 rrm2b,LOC107556385,LOC108425040,LOC107394698,LOC106956493 coding downstream 672779 26382511 ~ 26390982 (-)
AMCG00002690 NA coding downstream 687865 26363962 ~ 26375896 (-)
AMCG00002704 kiaa0196 coding upstream 14338 27114205 ~ 27119264 (-)
AMCG00002709 esrp1,LOC107593677 coding upstream 41258 27141125 ~ 27141425 (-)
AMCG00002706 NA coding upstream 140469 27240336 ~ 27244422 (-)
G125376 NA non-coding downstream 85841 26977684 ~ 26977920 (-)
G125361 fam91a1,LOC106570778,LOC106589122,LOC107702086,LOC107724353 non-coding downstream 147796 26913707 ~ 26915965 (-)
G125297 NA non-coding downstream 400732 26661704 ~ 26663029 (-)
G125291 NA non-coding downstream 407890 26655628 ~ 26655871 (-)
G125269 NA non-coding downstream 565311 26495949 ~ 26498450 (-)
G125415 NA non-coding upstream 32019 27131886 ~ 27197333 (-)
G125473 NA non-coding upstream 265595 27365462 ~ 27365663 (-)
G125474 NA non-coding upstream 268741 27368608 ~ 27368869 (-)
G125475 NA non-coding upstream 270727 27370594 ~ 27370875 (-)
AMCG00002705 klhl38a,LOC103030765,LOC106570780,LOC103376378,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC104967054 other downstream 188515 26854893 ~ 26875246 (-)
AMCG00002694 NA other downstream 398994 26613476 ~ 26664767 (-)
AMCG00002688 NA other downstream 757838 26283340 ~ 26305923 (-)
AMCG00002682 NA other downstream 784140 26267052 ~ 26279621 (-)
G124848 NA other downstream 2724195 24291787 ~ 24339566 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010984 washc5 coding NC_007127.7 CM002900.2 43291709 ~ 43317927 (-)