AMCG00002708


Basic Information

Item Value
gene id AMCG00002708
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26821965 ~ 26831030 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002708
TGAAAGTTTTGCAACCAAGAACAAGATGGTAAACAAAGCCACGTGCTGTGAAAGTCTTTCCAAAAGGGGCGGGATTGTAAATATTTCCGGTAACTTCGCAGGCTGCTATAAATACAACTGCGTTCACTGAGCTGCAGCAGAGCACAGAGAGCAGGAAGAGAAAATCCAAGcgaaacaaaaccttttttaaaatactaaaccaaataaacagtatttttaatttagaaactCAGGTGATAgatagtttttcttttataatttgAAATCTTCCAAGATGCCATTTTTAGGACAGGACTGGAGATCCCCAGGACAGAGTTGGGTTAAAACTGAAGAAGGCTGGAAAAAATACTCagatgagaaaaacaacaatgttgcTGAATTAAAGAGCTATTGTAAAAGTGAGGagttttataaagaaaatatatttcttgctATGAATTATGATGTGGCTGCAAAGAAACGCAAGAAAGACCTTCtgaataacaacacaaagatTCCTTATTTCCATCGGGATAAATGGATATATGTTCACAAAGGAAGTACAAAAGAGCGTCATGGCTACTGTACTCTGGGAGAAGCATTCAACCGATTAGACTTCTCTAGTGCAATTATGGATTCCAGGCGATTCAATTATGTAGTGAGGCTGCTGGAGCTGATTGCGAAATCTCAGTTGACGTCACTGAGTGGAGTGGCTCAGAAGAACTACATGAACATTCTGGAGAAAGACATGGGGAAGTCCGTGCTGGTGGGAAATATTAACATCTGGGTCCATCGCATGGAAAACATCCTTCACTGGCAACAGCAGCTCAACAACATCCAGATCACCAGGCCTACGTCAAAAGGCCTGACCCTTACAGACCTGCCAATGTGCCTCCAGTTGAACATTATGCAAAGGCTGTCTGATGGCAGAGACCTGGTGAGCCTAGGCCAGGTGTGTCCTGGCCTGAATGTACTTAGTGAGGATCGGCTGTTGTGGAAGAAGCTGTGCCATTACCACTTCACTGACCGCCAGATCCGCAAACGTCTGATTATGTCTGACAAGGGCCATTTGGACTGGAAGAAGATGTATTTCAAGCTGTCTAGGTGCTACCCCCGCAAGGAGCAATACAGTGACACATTGCAGTTCTGCACACACTGCCATATCCTCTTCTGGAAGGACACAAACCATCCATGCACAGCCAACAACACAGAGGGTTGCTGCATTCCTGTTTCCCCACAGGGCTTCATTAATCTGTTCAAATATTGAGAGGCTATAAACACTAAATTGTACAAGTTTTTGATGGTGCCATGGATTTTTGGAAAGTTATGAGATGGGACTGATCATATGATGACAAGCTCTAAGCTGTGAAGGTGCATAGAGAATAAGTGACAAGAATTGGTGGCTGTTCTACATCATAAGAACAATAGAAACATGGACAAAAAGGCTGGAGACAATGGGACTGTTCAGAGAGCTGACCATAACGATTACATGCTCAATTACAAGTCATATACAACTTGCAGcctattcttttttttacacaaaatactttttttaaaaacattgcttatgttttttttttttaattaaggatCAAGCCAGTTTAATGTAGATTCCTGCATTTTTccactaaaatatatatattttgtgtaatatatattttatgactGAAAGATATTTCTACATGAAAGAAAtggtaaatatgtattattctatAACTCTAGTCTTGAAAgtatttgttaatgttattaGTTCAAacattgattaataaataaacatatatacatgtataaaaaaaaaaaaaaaaaagtaagccAATGATCTCTTGGCAGAGATTTTGGGTTTAAGTTTGGGTCTCGTTGGGGCTCTCTAGTCTTTACAAATTTGCCCTCAGTAACACTAGTTATGGCCCGTTTGGCTTGGTCCACACATTGAGCACTTTTCTGGATTATGCAGAAAAGGGTTAGGAAAATATGGTAATGTTCAGAAAATGTAGGTGGTAGTGTGATAAGTGCTGATTGAAATTAAGTATGCAAacctatatttttaatgtaaatttattttttcacttttttatacACTTGTTATTTGCTAcagtttttttccaaaataatgtgatatatctgtgtgtttgtgttttatgtagCATTGCACTTTCTGATGGTACAGTACCCTAAATGAATAGGTATGTCACTGAAGTGTGTTGAACCTCTTGAAACAGAAGTCGAAAGGTGAATACCGTATACTAACTGcattgtggttttattgttttaagctTCTTaattattcagtgttttttaattgagaCAGTGATGATTATTAAATGATCATTATTacatgcagttaaaaaaaacttgaaattgGTTGTGGCTTTAATCCAAGAAGAAGTGAGGAAACTGTCGATAATACTAATTTTaagtattacttttttattatttccataaaTGATAGATCCAATTCATACAGATCAAAGATTCTGAATAAACTTTGCAGTATTGCAGTATTAAAGCATGCACTGGAATGAGCCATGAGGCGTATTAGGAATTTATGCCtctttaaaagtttaaacattaaaaataataccagttaaaaaaattatataacaGTATGTTAAGTTATACAGTTAACTTTTATAAGATTTCCATATCATGAGAGTAGATGTTAAAACCTCAGATTAGAACTTGTCTCTCACCAAGAAACACCTCAATGCATTTAATAGTTGTTTTTGAggcactgcatttttttaactgaactgATTCAATGAGAAATAGTTACAGCTTGTGGAAGTGTACTGCATGTAAAACTAGGtgcagaccaaatcaaaactttggcctGCCTGTCAAAATCCAGTACTTTATGgtgcatttgctttttaagaAAAATCCTGTCAATCAAAAACCCGCTATCtggtattgtaattgtaatttgctaGTGTCAATTAATTGCTAAATCAGTATTTGATATTAGTTAAAATCATCTGATATGTATAAAAAAGCATTGTATGGAAATGGTTAGTGTGTTTCTGTAAAAGACAAGTACAAGACAATGATATGTCATTTAATAACCTTGTTTTTGAAGACTGCCAAAATGggattacacattttaaacaatccttaattttttttaaacgtttttacattatttgtgtgTTAAGAATTGGTATAATCTAGGAACCTTTTTGTATTGTAACTTTGATACATTTTGTACTGCACAACTGCATGAtgctatttcatttttttattgatttcccttttttctagtttaaaaaatgtgtgctCATTATTTTAGTGCTGAAAAGAAATTTTATTTATCTCTTAAATGCCAGCTGTATAGTGATTTTTATGTTTATCCTCACATGGGTTTTATTTACCTGTGCCCTATGAATGGTGTCCTGTGTGACTGGTGTTTGTCCATCACAGTTCTGTTGAGGTGTACTGCTGGTTAAATAAACCATCACAAATACTACCACATTCTAAGGTCTGTTCTT

Function

GO: NA

KEGG:

id description
K10305 FBXO25_32; F-box protein 25/32

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002708 True 3464 mRNA 0.35 9 26821965 26831030

Neighbor

gene id symbol gene type direction distance location
AMCG00002693 NA coding downstream 213213 26596131 ~ 26608752 (-)
AMCG00002686 ubr5,LOC102786672 coding downstream 369491 26395882 ~ 26452474 (-)
AMCG00002685 rrm2b,LOC107556385,LOC108425040,LOC107394698,LOC106956493 coding downstream 430983 26382511 ~ 26390982 (-)
AMCG00002690 NA coding downstream 446069 26363962 ~ 26375896 (-)
AMCG00002687 laptm4b,LOC107702097,LOC107724295,LOC107394696,LOC107565197,LOC105907721 coding downstream 483808 26322898 ~ 26338157 (-)
AMCG00002707 kiaa0196 coding upstream 232731 27063761 ~ 27099867 (-)
AMCG00002704 kiaa0196 coding upstream 283175 27114205 ~ 27119264 (-)
AMCG00002709 esrp1,LOC107593677 coding upstream 310095 27141125 ~ 27141425 (-)
AMCG00002706 NA coding upstream 409306 27240336 ~ 27244422 (-)
G125297 NA non-coding downstream 158936 26661704 ~ 26663029 (-)
G125291 NA non-coding downstream 166094 26655628 ~ 26655871 (-)
G125269 NA non-coding downstream 323515 26495949 ~ 26498450 (-)
G125200 NA non-coding downstream 579434 26242254 ~ 26242531 (-)
G125178 NA non-coding downstream 616094 26204892 ~ 26205871 (-)
G125361 fam91a1,LOC106570778,LOC106589122,LOC107702086,LOC107724353 non-coding upstream 82677 26913707 ~ 26915965 (-)
G125376 NA non-coding upstream 146654 26977684 ~ 26977920 (-)
G125415 NA non-coding upstream 300856 27131886 ~ 27197333 (-)
G125473 NA non-coding upstream 534432 27365462 ~ 27365663 (-)
G125474 NA non-coding upstream 537578 27368608 ~ 27368869 (-)
AMCG00002694 NA other downstream 157198 26613476 ~ 26664767 (-)
AMCG00002688 NA other downstream 516042 26283340 ~ 26305923 (-)
AMCG00002682 NA other downstream 542344 26267052 ~ 26279621 (-)
G124848 NA other downstream 2482399 24291787 ~ 24339566 (-)
G124829 NA other downstream 2560142 24261565 ~ 24261823 (-)
AMCG00002705 klhl38a,LOC103030765,LOC106570780,LOC103376378,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC104967054 other upstream 23863 26854893 ~ 26875246 (-)

Expression


Co-expression Network