AMCG00002709 (esrp1,LOC107593677)


Basic Information

Item Value
gene id AMCG00002709
gene name esrp1,LOC107593677
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 27141125 ~ 27141425 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002709
ATGAAGAGAGTAGATGACAACACTGTGATTAGAGCCCGGGGCCTTCCATGGCAGTCGTCAGACCAAGATATGGCCCGATTCTTCCGTGGACTCAACATTGCAAACTCTGAGGCTCAAGGCAGGAGGAATGGGGAAGCTCTGGTAAGGTTTGTGAGTGAAGAGCACAGAGACCTGGCCttgcagaaacacaaacaccacaTGGGAAACCAATACATAGAG

Function

symbol description
esrp1 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleoplasm. Is expressed in several structures, including digestive system; ectoderm; epidermis; median fin fold; and tail bud. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 109. Orthologous to human ESRP1 (epithelial splicing regulatory protein 1).

NR:

description
PREDICTED: epithelial splicing regulatory protein 1 isoform X3

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002709 True 219 mRNA 0.50 2 27141125 27141425

Neighbor

gene id symbol gene type direction distance location
AMCG00002704 kiaa0196 coding downstream 21861 27114205 ~ 27119264 (-)
AMCG00002707 kiaa0196 coding downstream 41258 27063761 ~ 27099867 (-)
AMCG00002708 NA coding downstream 310095 26821965 ~ 26831030 (-)
AMCG00002693 NA coding downstream 532373 26596131 ~ 26608752 (-)
AMCG00002686 ubr5,LOC102786672 coding downstream 688651 26395882 ~ 26452474 (-)
AMCG00002706 NA coding upstream 98911 27240336 ~ 27244422 (-)
G125376 NA non-coding downstream 163205 26977684 ~ 26977920 (-)
G125361 fam91a1,LOC106570778,LOC106589122,LOC107702086,LOC107724353 non-coding downstream 225160 26913707 ~ 26915965 (-)
G125297 NA non-coding downstream 478096 26661704 ~ 26663029 (-)
G125291 NA non-coding downstream 485254 26655628 ~ 26655871 (-)
G125269 NA non-coding downstream 642675 26495949 ~ 26498450 (-)
G125473 NA non-coding upstream 224037 27365462 ~ 27365663 (-)
G125474 NA non-coding upstream 227183 27368608 ~ 27368869 (-)
G125475 NA non-coding upstream 229169 27370594 ~ 27370875 (-)
AMCG00002705 klhl38a,LOC103030765,LOC106570780,LOC103376378,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC104967054 other downstream 265879 26854893 ~ 26875246 (-)
AMCG00002694 NA other downstream 476358 26613476 ~ 26664767 (-)
AMCG00002688 NA other downstream 835202 26283340 ~ 26305923 (-)
AMCG00002682 NA other downstream 861504 26267052 ~ 26279621 (-)
G124848 NA other downstream 2801559 24291787 ~ 24339566 (-)

Expression


Co-expression Network