G120193 (ube2j2,LOC107599097)


Basic Information

Item Value
gene id G120193
gene name ube2j2,LOC107599097
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 100119 ~ 103273 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU150603
AACCccctctttttttatttgtttttttttttaagaaaagactAGACAGTACAACAGCATCTTGGGCATATACAAGACATGGCAGAATTAGGagcaattataaataaaatcgaGAGCAAACctcaaaattaaagaaataaggaaaaaaggaaaccattataaatacaattaatgttttccaaatgtcaCCTTTTTAAAACCTATAAAGTATCACGCTATACTGGTTAATTGAGAAAGTATTAAGCTTAAACCATGTATGCATGTGAGTATTtaagtttaatatataaatataagattATAAATCAATTACTTCAGAGTTCATGGCTAAATTTGGAACACCTGATATTAACAATTTCCATATTAGCTGCTGCCACACACAACTGAACACAAAGGATTTGGGACAATTaggttacttatttttttcaactGCAAATTTTAAATGACTTACTACGTCAGCAAGCAGAGAAATAGCGGCCCAGCAAACTGAGTATAACCTAAAACAGGGTTTCTTCTGGTTTTCGGTTCACAAATGTTTTCTATACATGTTAAACATTTTTACTGCGCTAAACTACTTTCAGCTCTTAAACAATTAgcccagaaaacaaaaccagcatTAACTTCGTACACATGGGATTGTGTCCATTTGTCATGACGAGGAAACCAATCAAACTGAGGACAGACTGAACAGATTGCAGTTTGCTTTACACAACATACTGGAAAAGggaactggggaaaaaaaagggacTGAATGCATAACAAGTCTAAATAATGAGGACTTCAGTGACAATGAACATCAGAGCCCCTGGACATTTCACAGCCCAGCAAACATAAAAACCCACTAGCGtttcttcaaatgtttatttgaatccACTGTAGAATATTGCAcaaaagttttcatttaaaaatatacggACATCCATGTGTCTGAATACAGGTGTTGGATTTTAAAccattaatggaaaaaaatcatatatatcgTACTCTACTTTCCTTTCTACGTGAACTGAGACTTGTTTTGGTTCTGCCTGTGTTTCTAATAGTTTCCTGTGTGGAGAACTGAGGAGTCGACTCCTCACCGCTTGAGCAGCAGTGACACTAAGTGGTTCAAACAGGAAACTACCTTAAACATGACTATCGTTGAGAACGAACTGCATCGATGACGTAGTTATGGTCATAACAATGTTCACCCTAAGAGCTACATTGTCTTAATGTACACAATGTACATAAAATACTAAAGTTCAGCTAAACGTCTCACAGATGTGCCACAATAAACAATGTCTTTAATACTGCGTCTGATGGGAAATGATACAGTATAAAAACGGCTTATCTTGTCAAGACTTCTTAAAGAGCTCACTTGAAGAGGGATGCCCTCTGCGCAGCAGCAGACGCACAGATGTCTTTCGACTGTGGTCAATGAGGAGTGTGGAGAAAGACGCAGATGAACCCAGCCTTTCTGAGTGGATTGGTCTTCAGTTAGTTCAGGCATCACTCTCGTACAGAAAAACGCAGCTAAGTAAGATACacaccagacagacagacacagtctTACCGTTATAGAATCGATTCATTATTTACAAATCATCAGGATTGTATTCTGGaagattcatttaaaaataaataaatgagtcaaACTGCAAATCATTCGCTGCCCAGATTAAGTAATGCGTTACAAAAGCACGTCTACTCACTCCTGCCTCACCCCTTTACCCTTCTTGTCTAAGTGGAATGGATGGTGGTTGGACCGAACGTGGTTTCCGTTTTAGTTCTCGCAATGAGACGCTGAGAATTATGTCAGTATTGCTTCCCCTGTTCTGACACCCATGAGCCAACCTGTAGGTTTCGCATCACTGCAGCACTTACACAAATCACACCCCCCCCTTCAGATGCCCTTCAGTCCCGGGTTTCTCATCTCCCGCTTTGTTTCCATTCGATTCTTTGTCTCAGCCAGACCCCCGAGTGTCTCCGCCAGGACTCCCTTTCCTCATTCTTGTGCTATGCTTCTGAGTACGTACTTCACTGTGTAGGCGAACGCTGCGAATCCCACTATGACGAACAAGTTTGCCAGGGCGCCCCCGAGGAGTCCGTGGTTGCGGTTGGCCTGCTGGAGGCCGGGGGGGTTGGCTCCGCCCAGCGGCACGTGGCCGTTGAGCACCGGGAGGCCGTTCTGGGCGTTGTGTGCCTCGCCGTCCGGCACCACGTCCGGGAGAGGCAGCACCTGGGGTCTGATGCTCAGCTCCTCCTGCACTTTCTGCTTCTGCTTGATTTCCTATGAACAGTGATgggaaaaatcaatacaaag

Function

symbol description
ube2j2 Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum and nucleus. Orthologous to human UBE2J2 (ubiquitin conjugating enzyme E2 J2).

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 J2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU150603 True 2299 lncRNA 0.42 2 100119 103273

Neighbor

gene id symbol gene type direction distance location
AMCG00001998 LOC104943579,LOC101075650 coding upstream 28248 57268 ~ 71871 (+)
AMCG00001995 NA coding upstream 69579 29548 ~ 30540 (+)
AMCG00001997 NA coding upstream 72538 25438 ~ 27581 (+)
AMCG00002001 NA coding downstream 152039 255312 ~ 263137 (+)
AMCG00002002 NA coding downstream 164535 267808 ~ 275768 (+)
AMCG00002000 ddx19,LOC108411521,LOC107699345,LOC103386132,LOC107556002,LOC108255077 coding downstream 176934 280207 ~ 289733 (+)
AMCG00002005 cpsf3l coding downstream 195238 298511 ~ 316562 (+)
AMCG00002009 NA coding downstream 231163 334436 ~ 398486 (+)
G120201 NA non-coding downstream 19269 122542 ~ 123168 (+)
G120254 NA non-coding downstream 564466 667739 ~ 668057 (+)
G120494 NA non-coding downstream 1770939 1874212 ~ 1876528 (+)
G120516 NA non-coding downstream 1794661 1897934 ~ 1955361 (+)
G120536 NA non-coding downstream 1893154 1996427 ~ 2005914 (+)
AMCG00002019 NA other downstream 579397 682670 ~ 992764 (+)
G120518 NA other downstream 1820749 1924022 ~ 1940816 (+)
AMCG00002076 NA other downstream 2748881 2852154 ~ 2854127 (+)
G120742 NA other downstream 2853635 2956908 ~ 2959475 (+)
AMCG00002098 NA other downstream 3430541 3533814 ~ 3542177 (+)

Expression


Co-expression Network