G120320


Basic Information

Item Value
gene id G120320
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 420588 ~ 420925 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU150772
atcagcaagatttctggctcccaggtgtcttttatacaggtaatgagctgagattaggagcactctcttaaagggagtgacacctgtccacagaagcaatcaatcaatcagattccaaactctccaccatggccaagaccaaagagctatccaaggatgtcagggacaagattgtagacctacacaaggctggaatgggctacaagaccatcgccaagcagcttggtgagaaggtgacaacagttggtgcgattattcgcaaatggaagaaacacaaaataactgtcagtctccctcggtctgggg

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component

KEGG:

id description
ko04020 Calcium signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU150772 True 306 lncRNA 0.47 2 420588 420925

Neighbor

gene id symbol gene type direction distance location
AMCG00002008 NA coding downstream 99466 320151 ~ 321122 (-)
AMCG00002007 NA coding downstream 119764 298390 ~ 300824 (-)
AMCG00002006 NA coding downstream 129308 290519 ~ 291280 (-)
AMCG00002004 NA coding downstream 214913 158030 ~ 205675 (-)
AMCG00002003 NA coding downstream 268396 133459 ~ 152192 (-)
AMCG00002012 NA coding upstream 75908 496833 ~ 503893 (-)
AMCG00002010 NA coding upstream 108079 529004 ~ 532307 (-)
AMCG00002011 NA coding upstream 115430 536355 ~ 543084 (-)
AMCG00002021 NA coding upstream 234821 655746 ~ 663452 (-)
AMCG00002020 NA coding upstream 296206 717131 ~ 729872 (-)
G120334 NA non-coding upstream 266019 686944 ~ 689958 (-)
G120399 NA non-coding upstream 564478 985403 ~ 987224 (-)
G120431 NA non-coding upstream 804794 1225719 ~ 1228159 (-)
G120477 NA non-coding upstream 1047014 1467939 ~ 1528085 (-)
G120513 NA non-coding upstream 1453288 1874213 ~ 1876061 (-)
AMCG00002044 NA other upstream 1065626 1486551 ~ 1490567 (-)
AMCG00002078 NA other upstream 2424457 2845382 ~ 2847937 (-)
AMCG00002085 NA other upstream 2500327 2921252 ~ 2931018 (-)
G120748 NA other upstream 2574583 2995508 ~ 3004917 (-)
AMCG00002094 vamp3,LOC107582408 other upstream 2692517 3113442 ~ 3128440 (-)

Expression


Co-expression Network