G120399


Basic Information

Item Value
gene id G120399
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 985403 ~ 987224 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU150863
CATagctgtatgtgtatgtatatataagacCTGGTCTTTGAAGTCACTGCTCAATCAGCAACACACTGGTAGTCATAATAAATGagcattagttttgttttgtaaaacagAGAACAATAGCAATGAATGGCTGTAtttcacaattgttttatttggaagAAAGACACGATGCTTAGACAGTTAAGCTGTTGTCATCAATATAGTCATGTCTTATGGTTTGTCAAGTGTCCCATTTAATCCCCCATCCTGTCAGTTATATAGTACTAATCCTCTATGACaagatttacttttaaattctaGACATctataaaacaattgtatttttttttttaattaaggacTGTAGTAACTCTCTCTTTTGGGTTGTGTTCctgctgagctctcaattacaaaattaaactcacCTGAAATATCTCAAATCAACCATTCAAATGTCCAATAAAGCAATTATAATTTGATAATGTCTCAaattatttaagtaatttacaGCTCAGCTAGGCCAAAGACCCACAGACAAATGTACTCCAGGATGAGGGCTAAGACCGAAGACAGCTTCAGTCCATCAACATTGAAAGTGTTCCTTGAACATTTATTCCCCATTTTCATGGTCGAAAGAAATCAACAGGATATTAAAAGATTCCAATAGACTTGGTTTGCATAAATCGATCATTCcagtttttaaaaaagcaccTCAAAGAACAACAAGCATACTTCCCTTCtcacaatttataaaatatattaacctCTTCAAAAATAACCTCTCAATTGTATATTGCAACTATGCATTatctcactatatatatatatatatttgacagaTTTGTAATAAAGAGGAgatacaaaaccaaaccaaagtTTAGTTCAAGCGGTCATTAAGGTCCCTAAGGGTCTGTGGTCTAAAGCAAAGACTGGGGTAAACAGTTCAGTCTTTTGAGATCCAGAATGGAAATGAGGATCAACAGACACTCGTTCTCACGCAGGACTGAAGCACTGCGGCACACTGGAGACGAGTCTGGTTCACAGGTGAACACTCATCTCTTCAGCATCTGAGGATTGACAAACTGCAAGTCAGAAGGTCGTGGTTCATGTACTCTTGTTTACAGGAGAAACACCCTTGCCCTAAAGGGACATTAGTTTCCCCATTACTCTGAAATCTGAAACAGCGGTGAAGAGGCGAAATTATTGCATAGAGATGGGAGACTCCACACACTGATAGCAGGACACGCATTCAATCAATACTGAGGAATACAGGAACATAGCAGGTGTGATCACATGTCCTTCTGTAGGCCAACAATGGAGGATCTGTCCTATGAATGTTGACAATACAAAGAGAAATGactgcatttcagaatataacACTGCTAAAAGAAGTGTGAATAACTCCCTCACATACATAGAAAATAAGAAACTACACCACCTTTGAACACCAGGTTAAAACCAGCTTGGGGGGGTCAGGGGAAGTGGCTTTGAGACCCAGACCCTCCATTGGGATCACACCTTGGAGCTCCATAAGGCCGATGGAAAGAGAATATATGAGACTGACCAAACCAGGTAGTAAACACAGGCTGGAGGGAAAGAGGAGCACAGCACCATGAGGACCCCTGCAATGGAAAACAAGAGGGCGAATTAGGATTGATCATTGAGCCAATTAAAATAAGATCAACACAAGCAAATAATGAAGTGGGCCGTTCTATGTCTGGTagtaaagtaaaatacacaTTCCGCACTCTCAAAGTTTCTCAAAGGCAAGTGTTCatctattgatttgtttaaggTAGGGTAGCAATTCAATAC

Function

NR:

description
PREDICTED: plasma membrane calcium-transporting ATPase 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU150863 True 1794 lncRNA 0.38 2 985403 987224

Neighbor

gene id symbol gene type direction distance location
AMCG00002026 NA coding downstream 66699 910934 ~ 918704 (-)
AMCG00002020 NA coding downstream 255531 717131 ~ 729872 (-)
AMCG00002021 NA coding downstream 321951 655746 ~ 663452 (-)
AMCG00002011 NA coding downstream 442319 536355 ~ 543084 (-)
AMCG00002010 NA coding downstream 453096 529004 ~ 532307 (-)
AMCG00002031 NA coding upstream 4740 991964 ~ 1001586 (-)
AMCG00002036 NA coding upstream 332771 1319995 ~ 1325849 (-)
AMCG00002035 cldn19,LOC106583106 coding upstream 342323 1329547 ~ 1350758 (-)
AMCG00002037 NA coding upstream 386519 1373743 ~ 1377930 (-)
AMCG00002043 NA coding upstream 432843 1420067 ~ 1430684 (-)
G120334 NA non-coding downstream 295445 686944 ~ 689958 (-)
G120320 NA non-coding downstream 564478 420588 ~ 420925 (-)
G120431 NA non-coding upstream 238495 1225719 ~ 1228159 (-)
G120477 NA non-coding upstream 480715 1467939 ~ 1528085 (-)
G120513 NA non-coding upstream 886989 1874213 ~ 1876061 (-)
G120527 NA non-coding upstream 945029 1932253 ~ 1975025 (-)
G120533 NA non-coding upstream 1001145 1988369 ~ 1988627 (-)
AMCG00002044 NA other upstream 499327 1486551 ~ 1490567 (-)
AMCG00002078 NA other upstream 1858158 2845382 ~ 2847937 (-)
AMCG00002085 NA other upstream 1934028 2921252 ~ 2931018 (-)
G120748 NA other upstream 2008284 2995508 ~ 3004917 (-)
AMCG00002094 vamp3,LOC107582408 other upstream 2126218 3113442 ~ 3128440 (-)

Expression


Co-expression Network