G120431


Basic Information

Item Value
gene id G120431
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 1225719 ~ 1228159 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU150903
CGCAATAAAGTGTGTTGTGCAGGTAAGTTATTACCAGCTGAGGCAGAATGTTTCCCACACTAGTTACGTAATGAAACGAGTCTTcgttaatatatttatttccatgaAAAAAGACTGGACTTAGTactttataaataacaatattttataaataggATTGTTTTCGGTGAACTACAACAAGGACAAGTCAAACTTTATTGGCACACAGAGCTTCAGTCCATATGCTCAGCATCAGGGGTCATTAGAGTGGAAGAAATAGGACAGTTTAcaggataaaaaataattataaaaaaaaagaaatacaatgttCCCAGGGCTAGATATTCAAAAGACTTTCACATGAAAATACCTCCCAACCCAGAACAGAACTGATCCAAACTTTTGGCTCAGCGTTTCTGTACTCATAAAGctaagacacattttaaaaagtatttttcagatGTCCACTGCAGCGCAAGATCATTCAGTCCCAGCTGCGACTGTTCTTCCAAACCTCCGGGTGTGTGGATAGCAAACCCTGCTGATTCCCTCTTTCTCGGTCCCCATGTAAGACTTAATAATAGATTGCTTTTGTTTACCATGTGCATTCCTCAAGTTAACCATACTACTATTCTCTGAACCCTTGTCAACGGTAAGAACGTCCCTTTGAGCAGCTGGTGTGAAATGAGAGAAGCGAAACAGGTGAGCAGGTTGGACAGGCGCAGGGGGGTTGGAAATGTCTCGTGAGATCCACAGGATTTGAAGGCACCTTTCAGCATGGTAGAAGGGATGTGGAGACAATCTCTTGGGCACAGAACATCCCAGGACGCGCACAAGCAGCTACAATCTCTCAGACCAGGATGCTAGACTCTCTCACCAGACACTCgtcaaatatatatgttttgcattGATTTCTTGTATTCAAAAGATGTCATTGCTAGGTAAATCTCAGCCTCATTCCCCCATTAACACCCTTCAATGAGTGACTATCGTTTACACTGCAGCTGCCAATGcaacattcaattaaatgtgtatcAGTGTTACACAAGTCACTTCAGCATCACACACCGAATGATCATTTCCTCACGCAAAGACAAGTGCAACACTTTCCAAAGCAGATGATGAGAAAACTGACACTTGCATGTAAATGTGCGTTGTCTGCAACGatattgccattttatttgtcGAGAACAActgcttttcatatttatagatttaaaatcttgtgaaatgcaaataaagagTTGAACTAAAAGGTGAACTTAGTCGTGAACTAGCAGTATGACTTCTTCGTTTTGCAAACCTCCCACACGCTATTCTGAGTAATTGCCTGAAAGGGAAcacatacaaaagaaagaaacaaactttAACCATCTcctgtttttaaatagaaaaactgcaaacacacagattGTAACACTTTTGAATATCTAGTCTGAAAGGGTTctctaagaaatgtaataattcacaacagctttttttctcttctccttcaTATCACTAGAGAGGCGAAACAGTGAACACTACGGGGAGGGGACAGTTTTCAAAACGTTCTTGTGCGCTACGACAATTCAGATCGGAGGCTCGACCGCTCGTACGTCAAGTGTCATTAGTTTTTGCGCGTGTTGTGTACAGCACTGGGAGCACCATCTTCTCCGTGTCTCTCGCAGAAGACGAGAATGTATCGCGTGCATGTTGGTCTCTACAGTCCGTATCAAATATGGAAACCAGGATCGctcattacattataaatgtcTTTTTGCAGCTGCTGTGAGTTCTTTCATATTTGACgtcccacaaacacacacaggctccACTGGTGAAAGTCTTCAGGCACCATTATTTCTCTCCAGTGCTTCAGTTTTTGTGTTACTTCTGAATTTCATCCACTATGTCcgtacagttacattttttgtacataaaaaaatggTTCCAGGAAATTGTTAAGGCAGTGTTCCATAAATATAAACAGGACAATAAATTGAACTGGTTGTAAAAATattacagagaaacacacacacacacgggcccCGGAATGGATAATGAAGCTCCCAGCAAGTGTCAATAAATCTTGTCCGAAAATTGTCTTCAGgtaacaaagaagaaaaaaaaagaccattCAGTCTTGGAAGTTTGTGtcgtttttgtatgtttttgcaaatataaacaGATGTTTCAAGAAGTCGGCCTCGAAAGCCTGGCCTTGGATTATATGTGCACTGAGGGGACGCTCCTGTTGAGTACCTGAACGCGCATCAACTGCACACTGGTCATGATCTTCTTCTGATGGCCCATCAGCGTCACTCCCAGCTTCTGGATGTCCCTGGAGGAGAAGAGACGAGGACGAGGACGTTATTTTGCCACTCAACAAAACAGAAGATGGCTGCACCGAATACTGGGAGAAGTGtggattcatttaaaacaacagtaaaGGAACATAACATATaactccttctctctcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU150903 True 2441 lncRNA 0.41 1 1225719 1228159

Neighbor

gene id symbol gene type direction distance location
AMCG00002031 NA coding downstream 224133 991964 ~ 1001586 (-)
AMCG00002026 NA coding downstream 307015 910934 ~ 918704 (-)
AMCG00002020 NA coding downstream 495847 717131 ~ 729872 (-)
AMCG00002021 NA coding downstream 562267 655746 ~ 663452 (-)
AMCG00002011 NA coding downstream 682635 536355 ~ 543084 (-)
AMCG00002036 NA coding upstream 91836 1319995 ~ 1325849 (-)
AMCG00002035 cldn19,LOC106583106 coding upstream 101388 1329547 ~ 1350758 (-)
AMCG00002037 NA coding upstream 145584 1373743 ~ 1377930 (-)
AMCG00002043 NA coding upstream 191908 1420067 ~ 1430684 (-)
AMCG00002042 NA coding upstream 213020 1441179 ~ 1447756 (-)
G120399 NA non-coding downstream 238495 985403 ~ 987224 (-)
G120334 NA non-coding downstream 535761 686944 ~ 689958 (-)
G120320 NA non-coding downstream 804794 420588 ~ 420925 (-)
G120477 NA non-coding upstream 239780 1467939 ~ 1528085 (-)
G120513 NA non-coding upstream 646054 1874213 ~ 1876061 (-)
G120527 NA non-coding upstream 704094 1932253 ~ 1975025 (-)
G120533 NA non-coding upstream 760210 1988369 ~ 1988627 (-)
G120571 NA non-coding upstream 764448 1992607 ~ 1992897 (-)
AMCG00002044 NA other upstream 258392 1486551 ~ 1490567 (-)
AMCG00002078 NA other upstream 1617223 2845382 ~ 2847937 (-)
AMCG00002085 NA other upstream 1693093 2921252 ~ 2931018 (-)
G120748 NA other upstream 1767349 2995508 ~ 3004917 (-)
AMCG00002094 vamp3,LOC107582408 other upstream 1885283 3113442 ~ 3128440 (-)

Expression


Co-expression Network