G120494


Basic Information

Item Value
gene id G120494
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 1874212 ~ 1876528 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU150981
GGGTTGACTGTTTCAGAccgcatttaaaaacaataccgggggtgggggggttggccGCGGACCCCCTAGCACTCCCTCACGGACCCATAGTGGTCCGCGGACCccggtttgggaacctctggtGTACATCACACCTGCTTCAAAGagtcatgactgcaagctttagAGCAACAATGTGAAAATTtagagggtctgaatacttttgccaGGCACTGTATATGAACTTTTAAGCTGATTTTAAATTGAGTTACACCTTCTCTCTTAATGGAAATGCTTTTAGTACACTTATTTGCTTGGAGTGCATCTCTCCTAAAGATTGGGCACTTGTTGACTTTTTGACCCACTTGCAAGTCATTCTTACCTGCTGTGGTCTCGGCATCATGATGAAACAGGTCAGGAAAGTACCCGAAATGCAAAACAGTGCTTTGAAGAGGAAAACCCATTCTTCTGcttttccttatttgtttattgtattttgtacacaGTGCAGATCGGTAAGGCTACATTCATGGTGAGTTGATGAGTGACtaacttttaaattatgtttttaaactgaaaagcaCAGACTTCTGTCCAGCGGTTTTAAGGTATAACTGAAACCGGCAAATGCAAACTTTTGCTTCTCATGGAGGTCTTACTATCTACggcaatgttaaaaaaaaaaataactgaatcaGTTAGGTTAAGCAGCAGTTAAAGATGGCAGTCAGAGTTCCTCCTTTAGTGGTCACTGTCCCCTtctaaaaagtgtgtttttgggAGATGGAGTTTGTGGAAAGGTACCTTAGGACCATGGTAGCATTTGAGCCACATCACCAGTTGGAGTTAAAGCTagttgcatttttctttttttcctttttgttttttacacatGATGACTGTTCTTAAAAATCCAATTACACTTCATGGGTTACTGTTCAAggataattaacacatttcatatttaagaGATTAAACCAGGAGTTTTACAGAAAGACAGCTGAGGCAAgtgtctgtaaatatattttggacAATAACTGCAAATCTACAACATTTCCTGTCTATTTATTAATAAGATTAACTGCCTTCAGAATAACGTTAATTACATCAACAGTATTATAAGAAATTCATTTTAAGACACCTTTTTTCTTTGGGGTTTTTATCTTCATTTCTAATTGAGCCCTGGATGATACATACagtgtattttgtacttttctcttttatttcctACCCTGGAAGTTcaaatttgttttctgttttccagaaaatacattgataatgGCAATACGGCTTGTGTTGTACAAGGATTTTCATCTGTTCAGAATCTGAATGAGCACAACAATGCCATACTTTTACATATCGTAATCTCAGCAGTTACGTTTGCCTGCTGTATGTGCACGCCATGGCTGTGAACACAGGCGTTTTCCTAGGTTAGACTTCTAGAGATGGCTGGGGATGGATTCCTGGCTGCTGCACAAAGTTGCTCCAGGACTTCAAACAGGATGTGGAAACGTCCTTAAAACCCCGTTTACATGTAGGATTCGGGGACTGCAGTGTAGGCATTTACCGCCCATTTACTGGAAAATCCTACATTTTCAGAAACGTGATCCTGCAAACCAATAGAGATGTATAATTGTCCTGTCTGGTCATTTCATTGGAAGAAAAGCCTGCTTCCCCTGAGGTCCGTAATCCCGTCAGTTTTCTGATCGAGTtccttttagttttctttttcagaatgGAGTAAATGGAAATTATCGTTTACTTAATAAATATACCATTCGGccctttttctattttaaatcgAACATAACTAATCCTGTTTTGGGTGTCCCATAAAATTCTGTATAgatatgtttatgtataaaaaaagacCTCCTTGTGTCTtgtaatcttttattttctcatgtctaaatattaataattaacttttttgttatttttatacacatttaagCCTTAACTATATTATCATTGTATGTTTATCacaattttatttcctttttttttgtttcatattgatGTTGTTCTGTAACCAGTACTGtatctacatttttttcttagcatggaatatactgtaaataatcTATATAATACTTACTGTTAACCCATTTTCTATATTAAATGATTATATAGGtctagttattattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacctccttTGTCTTGCATTGTGGTACCCTCTAAAGTTTGCGTTGGCTGTTCATCATGCGGCCAAGACTTTAAGAAGAAAATGGaatttgtgtaaaaacaaagaaaaaacaaacaataaaaataatgaaaaactatTTGTATCCTTTTGTTGTTCAATAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU150981 True 2317 lncRNA 0.36 1 1874212 1876528

Neighbor

gene id symbol gene type direction distance location
AMCG00002048 znf362,LOC105894282,LOC106582819 coding upstream 1048 1851995 ~ 1873164 (+)
AMCG00002047 trim62,LOC107756651 coding upstream 64931 1802786 ~ 1809281 (+)
AMCG00002046 trim62,LOC102789653 coding upstream 123548 1750215 ~ 1750664 (+)
AMCG00002045 wnt4,wnt4a,LOC107654388,LOC107565731 coding upstream 164625 1703230 ~ 1709587 (+)
AMCG00002039 cdc42,LOC101067723 coding upstream 401836 1464244 ~ 1472376 (+)
AMCG00002050 NA coding downstream 10701 1887229 ~ 1904008 (+)
AMCG00002053 NA coding downstream 109232 1985760 ~ 1986389 (+)
AMCG00002052 NA coding downstream 152085 2028613 ~ 2032618 (+)
AMCG00002051 NA coding downstream 178203 2054731 ~ 2076937 (+)
AMCG00002054 NA coding downstream 204705 2081233 ~ 2082288 (+)
G120254 NA non-coding upstream 1206155 667739 ~ 668057 (+)
G120201 NA non-coding upstream 1751044 122542 ~ 123168 (+)
G120193 ube2j2,LOC107599097 non-coding upstream 1770939 100119 ~ 103273 (+)
G120516 NA non-coding downstream 21406 1897934 ~ 1955361 (+)
G120536 NA non-coding downstream 119899 1996427 ~ 2005914 (+)
G120563 NA non-coding downstream 296942 2173470 ~ 2174499 (+)
G120564 NA non-coding downstream 298059 2174587 ~ 2176442 (+)
G120565 NA non-coding downstream 308252 2184780 ~ 2184980 (+)
AMCG00002019 NA other upstream 881448 682670 ~ 992764 (+)
G120518 NA other downstream 47494 1924022 ~ 1940816 (+)
AMCG00002076 NA other downstream 975626 2852154 ~ 2854127 (+)
G120742 NA other downstream 1080380 2956908 ~ 2959475 (+)
AMCG00002098 NA other downstream 1657286 3533814 ~ 3542177 (+)
AMCG00002152 NA other downstream 3342302 5218830 ~ 5226656 (+)

Expression


Co-expression Network