G120513


Basic Information

Item Value
gene id G120513
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 1874213 ~ 1876061 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU151001
tctttttttatacataaacatatcTATACAGAATTTTATGGGACACCCAAAACAGGATTAGTTATGTTcgatttaaaatagaaaaagggCCGAATGGTATATTTATTAAGTAAACGATAATTTCCATTTACTCcattctgaaaaagaaaactaaaaggaACTCGATCAGAAAACTGACGGGATTACGGACCTCAGGGGAAGCAGGCTTTTCTTCCAATGAAATGACCAGACAGGACAATTATACATCTCTATTGGTTTGCAGGATCACGTTTCTGAAAATGTAGGATTTTCCAGTAAATGGGCGGTAAATGCCTACACTGCAGTCCCCGAATCCTACATGTAAACGGGGTTTTAAGGACGTTTCCACATCCTGTTTGAAGTCCTGGAGCAACTTTGTGCAGCAGCCAGGAATCCATCCCCAGCCATCTCTAGAAGTCTAACCTAGGAAAACGCCTGTGTTCACAGCCATGGCGTGCACATACAGCAGGCAAACGTAACTGCTGAGATTACGATATGTAAAAGTATGGCATTGTTGTGCTCATTCAGATTCTGAACAGATGAAAATCCTTGTACAACACAAGCCGTATTGCcattatcaatgtattttctggaaaacagaaaacaaatttgAACTTCCAGGGTaggaaataaaagagaaaagtacaaaatacactGTATGTATCATCCAGGGCTCAATTAGAAATGAAGATAAAAACCCCAAAGAAAAAAGGTGTCTTAAAATGAATTTCTTATAATACTGTTGATGTAATTAACGTTATTCTGAAGGCAGTTAATCTTATTAATAAATAGACAGGAAATGTTGTAGATTTGCAGTTATTgtccaaaatatatttacagacacTTGCCTCAGCTGTCTTTCTGTAAAACTCCTGGTTTAATCtcttaaatatgaaatgtgttaattatccTTGAACAGTAACCCATGAAGTGTAATTGGATTTTTAAGAACAGTCATCatgtgtaaaaaacaaaaaggaaaaaaagaaaaatgcaactAGCTTTAACTCCAACTGGTGATGTGGCTCAAATGCTACCATGGTCCTAAGGTACCTTTCCACAAACTCCATCTcccaaaaacacactttttagaAGGGGACAGTGACCACTAAAGGAGGAACTCTGACTGCCATCTTTAACTGCTGCTTAACCTAACtgattcagttatttttttttttaacattgccGTAGATAGTAAGACCTCCATGAGAAGCAAAAGTTTGCATTTGCCGGTTTCAGTTATACCTTAAAACCGCTGGACAGAAGTCTGtgcttttcagtttaaaaacataatttaaaagttaGTCACTCATCAACTCACCATGAATGTAGCCTTACCGATCTGCACtgtgtacaaaatacaataaacaaataaggaaaagCAGAAGAATGGGTTTTCCTCTTCAAAGCACTGTTTTGCATTTCGGGTACTTTCCTGACCTGTTTCATCATGATGCCGAGACCACAGCAGGTAAGAATGACTTGCAAGTGGGTCAAAAAGTCAACAAGTGCCCAATCTTTAGGAGAGATGCACTCCAAGCAAATAAGTGTACTAAAAGCATTTCCATTAAGAGAGAAGGTGTAACTCAATTTAAAATCAGCTTAAAAGTTCATATACAGTGCCtggcaaaagtattcagaccctctaAATTTTCACATTGTTGCTctaaagcttgcagtcatgactCTTTGAAGCAGGTGTGATGTACaccagaggttcccaaaccggGGTCCGCGGACCACTATGGGTCCGTGAGGGAGTGCTAGGGGGTCCGCggccaacccccccacccccggtattgtttttaaatgcggTCTGAAACAGTCAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151001 True 1849 lncRNA 0.39 1 1874213 1876061

Neighbor

gene id symbol gene type direction distance location
AMCG00002049 NA coding downstream 52699 1818740 ~ 1821514 (-)
AMCG00002042 NA coding downstream 426457 1441179 ~ 1447756 (-)
AMCG00002043 NA coding downstream 443529 1420067 ~ 1430684 (-)
AMCG00002037 NA coding downstream 496283 1373743 ~ 1377930 (-)
AMCG00002035 cldn19,LOC106583106 coding downstream 523455 1329547 ~ 1350758 (-)
AMCG00002055 NA coding upstream 134412 2010473 ~ 2012433 (-)
AMCG00002057 NA coding upstream 209368 2085429 ~ 2119334 (-)
AMCG00002056 efhd2,LOC107683000,LOC107707677,LOC107591793,LOC107550510 coding upstream 245280 2121341 ~ 2127768 (-)
AMCG00002058 NA coding upstream 285483 2161544 ~ 2161834 (-)
AMCG00002061 NA coding upstream 299419 2175480 ~ 2210300 (-)
G120477 NA non-coding downstream 346128 1467939 ~ 1528085 (-)
G120431 NA non-coding downstream 646054 1225719 ~ 1228159 (-)
G120399 NA non-coding downstream 886989 985403 ~ 987224 (-)
G120334 NA non-coding downstream 1184255 686944 ~ 689958 (-)
G120320 NA non-coding downstream 1453288 420588 ~ 420925 (-)
G120527 NA non-coding upstream 56192 1932253 ~ 1975025 (-)
G120533 NA non-coding upstream 112308 1988369 ~ 1988627 (-)
G120571 NA non-coding upstream 116546 1992607 ~ 1992897 (-)
G120572 NA non-coding upstream 117272 1993333 ~ 1993623 (-)
G120573 NA non-coding upstream 117667 1993728 ~ 1994023 (-)
AMCG00002044 NA other downstream 383646 1486551 ~ 1490567 (-)
AMCG00002078 NA other upstream 969321 2845382 ~ 2847937 (-)
AMCG00002085 NA other upstream 1045191 2921252 ~ 2931018 (-)
G120748 NA other upstream 1119447 2995508 ~ 3004917 (-)
AMCG00002094 vamp3,LOC107582408 other upstream 1237381 3113442 ~ 3128440 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other upstream 1297444 3173505 ~ 3186353 (-)

Expression


Co-expression Network