G120518


Basic Information

Item Value
gene id G120518
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 1924022 ~ 1940816 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU151011
TGACAACATTGCTTTCTGAGCGGGGGAAGACCGACAGTTACGCAAAACCAGTCATTCCCACAGTTGTATCAAACCATCGAGACAGGTCTCTACAAAATGAGTGACAGCCTCAGGTGGAAGACCTTATGCCTTATCTGCATGGTTATGCTCTTTTGTTTAGCACTCTATCCCCACTTGTCCAACAGATCTGCAGAGCCAAGTTGCAATGATACCTCGTGTTTGGTCAAGAACAGGTCTTTTCAATGGATGAAGCCAAGCAGTGCTTCACCTTGTGGTACCAAAATATTGCAGGGAAAGAATATTACTCCTCCTAAAGATTGCAGGTGCATATTACCTTCTGGCAACAACTTAAGACCTGAAGAACATATTGATTACTCGCTAGATCTCTGgtaCCTGGATGCCTACCTCAAGGATTTCCTCACCTCTGCAGAGAAACATTTCATGCCCGGCTTGCGAGTGGTCTACTAAGTTTTCACTGACAGCCCTGAAAGGGTCCCTGAGATCCAGCTGGGGCCACAACAGAGCATTGTTATCATGAAGGTGGAGATGCACACATGCTGGCAGGACATCTCCATGATGAGAATGCTGACCATCACCAACGTCATAGAGTCCCACATCTTCCTATTTGTCTGccatctctgcctggatgcactcacatcatctcaagctcaacctctccaaatctgatctcctcttttttctccccttttccTCACCTtatgctgatctctccatctcattcCCCTTGGAAACTATGAcaatctctccctcttcttccgctaagaacctaggactcaccctcgatcctgcgctctcctacacccagtaCATCActacactgacacgcacctgcagattcttcctgagcaacatatgccaaatccgacccttcctcactaACAGTGGTGCTGCTAGAGTTTGTGAGGGCCCCAGGCACAACAATCGATCAGGGCCCGTTTTGGGGGGGATAGGGTGTTGACAGATTTTTCTCAGGTGAGAGGGGGGGGTGCATTGCGGTCAATGCTGTGGATTCAATATAGTCATAAGCTGCGCCTCTCCTCActaactactcgactcagcttcTCGTCCAGTCattggtcctctcccacctggactactgcaactccctcctggccagcctgcctgcaactactacccgctgctccagctcatccagaactctgcggctcgtctggtattctctctgccccgattcgcacacgctactccactgctccgctccctccacttgCTCCCaataccagcacgcattcaattcaagacatggaccctcacctaccgctgtctcgaccacactgcaccaaccTACCTTCAGACcttcgtctctccatacatcccctccagaccactgtgctcttccagtgccagaagactaactctacctcctctccactctccttcctccttagttattttcttctgcttctgAAGAAATTAATCAGACAACTGAATTGTCCTGGTAATTGAGATTGAGCCCCTCCCGCGCAGAGCATCCGGCAGCTTGCAGAAGACTGGGCCTCTTCTGCAGGCAGATAGCCGAACATGTGCGGGTCATTTCGAAGGAGAGACCAGACCCGATCCCTGCGCCAATCAATTGATCAACTGCTGTGCGGCAGAGGAGATACTGATGGAATACGAGAGTGAGGGGGAAGAGCCCGATCAATCGGCTGTAATAGTGAGGTGCAGCCGCTGCGGGAGGCATGGCCACCTAGCGAGAGGCTCACAGACCTGGAGGTATCTTAACCAGTAGTTCCTTTCTGCCCCGCATGGTGGCGCGCTGCCCTGTTACTGTCCTAAGGGCTAGTGGCCTCCCAGCCAGGAGGAGGGGTGTCAGTGGTCCCCGGCAACACCCCCAGTCGAAGCAGTGTGATAGTAGAGCCAGTGTCAATTAAAGCCTTGCATTGTGTGCATGTAATGTACATGCTGTGTCGGCACTGAACCCCAACCGCAGCACTCGCCACGCCTTGCTCGCATTAGGCAAAGAAAAGGGGGGGATCAGTCCTCCACGAGGGGGAGAGTGGGGCCCTTCACAGACCACAGCCCTTAATATGGCCCCATCGCTGCCTGTTGTTGTGGAGTACGAGGGGTGGACTGTGGTCAACAGGCAGAGGCGCAGGCCTAGGCCCCCAACTGTACCTTCACACCTGGAGCCACGCTCGGGGGCCACGCGCTCACGCCCCCAAGAAGCAGATGACAGCCCACACAGCATCCAGCTCTCTActccaaacacaacacagcaccacAGCTGCCCATCTGGGCCTAAAACAATGCCCGCTGGCTCCACAGTGGCCCCAGAATCACCTTCCTATTTTGGGCTCCCCCGGGGGCTCCGTTTGCACCATTGAAGGGGAACTTCATACCCCAACCCTTGGGGGGACCCCAACACAACATCCGCAGCCTCAACCCCAGGAAGTGTGAACTGCTCCGCAGGAAGGTTGTGTTCCTGGGGCATATTGTCAGCCCAGACGGTGTGGCCACAGACCCTGCTAAGGTGGCTGCTGTGCGGGACTGGCTGGTCCCTGGGAGCATGGCAGAACTAAAAAGCTTCATGGGGTTGGCCTCCTACTACCGGCGGTTCGTGCTAGACTTCGCCAGCATTGCCAGCCCTCTGCACTGCCTCACCGAGAGAGGACGGCCGTTCACTTGGGGACCggactgttttattgtgtatagtattttacattacataaaaagaacaattcaaatttttaatacttatgattaaaaacttttaaaatcaattctta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151011 True 2768 TUCP 0.53 6 1924022 1940816

Neighbor

gene id symbol gene type direction distance location
AMCG00002050 NA coding upstream 20014 1887229 ~ 1904008 (+)
AMCG00002048 znf362,LOC105894282,LOC106582819 coding upstream 50858 1851995 ~ 1873164 (+)
AMCG00002047 trim62,LOC107756651 coding upstream 114741 1802786 ~ 1809281 (+)
AMCG00002046 trim62,LOC102789653 coding upstream 173358 1750215 ~ 1750664 (+)
AMCG00002045 wnt4,wnt4a,LOC107654388,LOC107565731 coding upstream 214435 1703230 ~ 1709587 (+)
AMCG00002053 NA coding downstream 44944 1985760 ~ 1986389 (+)
AMCG00002052 NA coding downstream 87797 2028613 ~ 2032618 (+)
AMCG00002051 NA coding downstream 113915 2054731 ~ 2076937 (+)
AMCG00002054 NA coding downstream 140417 2081233 ~ 2082288 (+)
AMCG00002059 NA coding downstream 275735 2216551 ~ 2220784 (+)
G120494 NA non-coding upstream 47494 1874212 ~ 1876528 (+)
G120254 NA non-coding upstream 1255965 667739 ~ 668057 (+)
G120201 NA non-coding upstream 1800854 122542 ~ 123168 (+)
G120193 ube2j2,LOC107599097 non-coding upstream 1820749 100119 ~ 103273 (+)
G120536 NA non-coding downstream 55611 1996427 ~ 2005914 (+)
G120563 NA non-coding downstream 232654 2173470 ~ 2174499 (+)
G120564 NA non-coding downstream 233771 2174587 ~ 2176442 (+)
G120565 NA non-coding downstream 243964 2184780 ~ 2184980 (+)
G120566 NA non-coding downstream 261801 2202617 ~ 2203371 (+)
AMCG00002019 NA other upstream 931258 682670 ~ 992764 (+)
AMCG00002076 NA other downstream 911338 2852154 ~ 2854127 (+)
G120742 NA other downstream 1016092 2956908 ~ 2959475 (+)
AMCG00002098 NA other downstream 1592998 3533814 ~ 3542177 (+)
AMCG00002152 NA other downstream 3278014 5218830 ~ 5226656 (+)
AMCG00002190 acot7 other downstream 4645838 6586654 ~ 6602608 (+)

Expression


Co-expression Network