G120536


Basic Information

Item Value
gene id G120536
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 1996427 ~ 2005914 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU151033
acttgtctctgattggctgacaatgacagatctacgcgactccgccaatgggatcggtggatctgcacagatctgcggaACTGAGGCGCTACAAGGacgcgaccaatggcttcctctcagagaGTTTCTgcgtggaaatactttgacaagtaaataaaaacattgttaagtgtataatatgtgcagtgcaattaatataccacaaatctacagctggtatgttaacccacctaaaagccgaACACCATTCTGCAACACTATGactgaaaaggaaagaggagcaacaaacaaactaataatattaaaacacacacaaccagctattgctatatatattgttttcactggaacttgaacgAACAGGTACAGTAAGTAACCCCGGCTCGTTGCTGTCACTTCTTAACAGGGAGTAAACGTCATCGGTTTCTTGACAATGAGGACAGTCGCACTAATGTTGTCGTTGTCATTGAAGTGGAGCAGTTCATTCACTGTAGCACAGGGCTGTCCTATGCGGTGCGCTCTTTTGATTTCTATGGGGTCTGCTTCAAGGAGGCATTGTTAATGACATTCTTCAAAATGCAATCAGACATTCTATTGGAGAGTAAGGTTACCACATTGTTCTCTGAGTGAGGGGAAGAGTGACAGTTTTACAAAACAAGTCATTCCCACATGTGTCTCAAATCCTCAGGACAGGTCTCTACAAAATGAGcttAAGGGACAGCCTCAGCTGGAAGACCTTATGCCTTATCTGCATGGTCATGCTCTTTTGTTTAGCACTCTTTCCCCACTTGTCCATCAGatctgCAGAGCCATGTTGCAATGAAGCCCTGCGTTTGGTCAAGACCAGGTCTTTCGAATGGATGAAGTCAAGAAGCGTTATACCACATGGTACCAAATTAGTGCAGGGAAAGAATATTACTCCCCCCAAAGATAGCAGGTGCATATTACCTTCTGGCACCAATTTAAGACCTGAAGAACATATTGATTACTCGCTAGATCTCTGGTAAGTGCATCGAAAAGACAAGGACAGATACAGTTGGGTCCATAgttatttggacagtgacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151033 True 1066 lncRNA 0.43 6 1996427 2005914

Neighbor

gene id symbol gene type direction distance location
AMCG00002053 NA coding upstream 10038 1985760 ~ 1986389 (+)
AMCG00002050 NA coding upstream 92419 1887229 ~ 1904008 (+)
AMCG00002048 znf362,LOC105894282,LOC106582819 coding upstream 123263 1851995 ~ 1873164 (+)
AMCG00002047 trim62,LOC107756651 coding upstream 187146 1802786 ~ 1809281 (+)
AMCG00002046 trim62,LOC102789653 coding upstream 245763 1750215 ~ 1750664 (+)
AMCG00002052 NA coding downstream 22699 2028613 ~ 2032618 (+)
AMCG00002051 NA coding downstream 48817 2054731 ~ 2076937 (+)
AMCG00002054 NA coding downstream 75319 2081233 ~ 2082288 (+)
AMCG00002059 NA coding downstream 210637 2216551 ~ 2220784 (+)
AMCG00002060 NA coding downstream 242103 2248017 ~ 2251139 (+)
G120516 NA non-coding upstream 41066 1897934 ~ 1955361 (+)
G120494 NA non-coding upstream 119899 1874212 ~ 1876528 (+)
G120254 NA non-coding upstream 1328370 667739 ~ 668057 (+)
G120201 NA non-coding upstream 1873259 122542 ~ 123168 (+)
G120193 ube2j2,LOC107599097 non-coding upstream 1893154 100119 ~ 103273 (+)
G120563 NA non-coding downstream 167556 2173470 ~ 2174499 (+)
G120564 NA non-coding downstream 168673 2174587 ~ 2176442 (+)
G120565 NA non-coding downstream 178866 2184780 ~ 2184980 (+)
G120566 NA non-coding downstream 196703 2202617 ~ 2203371 (+)
G120602 NA non-coding downstream 219866 2225780 ~ 2225980 (+)
G120518 NA other upstream 55611 1924022 ~ 1940816 (+)
AMCG00002019 NA other upstream 1003663 682670 ~ 992764 (+)
AMCG00002076 NA other downstream 846240 2852154 ~ 2854127 (+)
G120742 NA other downstream 950994 2956908 ~ 2959475 (+)
AMCG00002098 NA other downstream 1527900 3533814 ~ 3542177 (+)
AMCG00002152 NA other downstream 3212916 5218830 ~ 5226656 (+)
AMCG00002190 acot7 other downstream 4580740 6586654 ~ 6602608 (+)

Expression


Co-expression Network