G120683


Basic Information

Item Value
gene id G120683
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2695581 ~ 2696387 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU151216
aagatgaataACAAAAGAACTACACAGTCATCATCCAAATTTTTAACAGTGGTCCCTCAAttcttgtgtgtatgtgtgcgtgtgtgtgtttcgtGTTTTTAAAGAGAATCCAATTTTGCTATACCGGTCGAGATGTAATACGGTTTGTTACGTCCAGagagattttaaaacattttaaacacagaagacgaggaaatggcaaaagagaCGCCTTGTTACAGTAAGGGAGAAAACTGCCAACAAGTACTGGTATTTGAGGCCTATTTTATTCAATGTTGGTGTGTTATTGTGCtttattgtaaatatgtgtCTTTTCAATCGTCCT
>TU151217
tattttgttattgttcattCAGAGGgtgatatgtatatatctatattgtatatatgtgaTGATAATGCGTTGGCTTTTTGTGTGACACTACCTTTTACTTGTAACTGCAGTTCTAgtcagtgttttaatgtttataaaggttttgtttgtactttattttccttgtatttgttttttattttagttttttttgtttccttttttctttttttgtttccttttttgttattgCACGGTTTATTACTTTTGCTGTCCAATGAAATGACACAGCTATTCTTTGTATCAGTTTAGTGCTGTAAAATAACTTCCGAAGTGTCATTAGGATTGTCGCTgccagaaccccccccccccgatatGCATGAAtggcacttaaaaaaataaaatgttaacttCACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151216 False 325 lncRNA 0.36 1 2696063 2696387
TU151217 True 397 lncRNA 0.31 1 2695581 2695977

Neighbor

gene id symbol gene type direction distance location
AMCG00002069 NA coding downstream 5994 2682702 ~ 2689587 (-)
AMCG00002071 NA coding downstream 15093 2678384 ~ 2680488 (-)
AMCG00002070 NA coding downstream 32780 2653818 ~ 2662801 (-)
AMCG00002068 NA coding downstream 50167 2635269 ~ 2645414 (-)
AMCG00002067 NA coding downstream 162821 2522750 ~ 2532760 (-)
AMCG00002072 foxj3,LOC103362994,LOC101077580 coding upstream 4851 2701238 ~ 2727268 (-)
AMCG00002079 NA coding upstream 159671 2856058 ~ 2857127 (-)
AMCG00002077 utp3,LOC102785935 coding upstream 165525 2861912 ~ 2872273 (-)
AMCG00002084 NA coding upstream 239134 2935521 ~ 2946153 (-)
AMCG00002083 NA coding upstream 260494 2956881 ~ 2961258 (-)
G120601 NA non-coding downstream 471176 2223343 ~ 2224405 (-)
G120589 NA non-coding downstream 532725 2162641 ~ 2162856 (-)
G120574 NA non-coding downstream 699514 1995768 ~ 1996067 (-)
G120573 NA non-coding downstream 701558 1993728 ~ 1994023 (-)
G120572 NA non-coding downstream 701958 1993333 ~ 1993623 (-)
G120743 NA non-coding upstream 256886 2953273 ~ 2953482 (-)
G120746 NA non-coding upstream 289186 2985573 ~ 2986779 (-)
G120754 NA non-coding upstream 312514 3008901 ~ 3020156 (-)
G120760 NA non-coding upstream 344161 3040548 ~ 3042500 (-)
G120789 NA non-coding upstream 395389 3091776 ~ 3092899 (-)
AMCG00002044 NA other downstream 1205014 1486551 ~ 1490567 (-)
AMCG00002078 NA other upstream 148995 2845382 ~ 2847937 (-)
AMCG00002085 NA other upstream 224865 2921252 ~ 2931018 (-)
G120748 NA other upstream 299121 2995508 ~ 3004917 (-)
AMCG00002094 vamp3,LOC107582408 other upstream 417055 3113442 ~ 3128440 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other upstream 477118 3173505 ~ 3186353 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G40523 NA non-coding NC_053115.1 CM020912.1 20419130 ~ 20423478 (-)