G120760


Basic Information

Item Value
gene id G120760
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3040548 ~ 3042500 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU151321
TCAATTCTAagaatatattattgtaaaaatatatatttgaaacaaatgtacaaCAGAATAGAATATAAAAAAGAAGCATCTGTAAAAGTTCACAGtaacttcaataataatattcaaaagcaaaacaaaatggatgtATTCAGGCGTGtccagtttaaatgtatctgataaacaatattgtgtcttttctgttctgttcagaTGGGGATGCTGTGTTGTAACTCAGTTGCCAGGAGTTGTGAGGATTACAGGTTgtcccctgatccaatagggtCCTCCTGGACATCATCAGGACTCGGACACAATGCAAGTCATGTTACAATCACGATCAAATTCGCCATCTCTGTAAGATCTTGTTCAGTTTACTGCTATTACtttaaagcatttgttttttttgctagTTTTTCAAGCAATGCCAAGTTTTCTCTGGACCAGATTGATTgaatgtcttcatttttttttgtatttctttcagcATGCCCACTATCTGATTTGAGCAATCAGCTGTTCTGCAAGACACACCAAATCATGGTATGAATGACAGGCTTCGGCTTGCTCTCCACACTGTCTGTTGTGTAAGTAACCCGGCCGGGGAAAGTCTCTTTCGATACACTGTCTCACTTCATACTCACAAAACAAGTCTGGAAAATCCAACATATCCACGGTTTGTGATATAAAGTGCGTATTAAAGCCACAGCACACAACTGTTAGTGGAAATTGAACAGTCAACGGTACAACTTCACAAGTCTCGCAGTGCTGTGTCATGTGATACAATTCACAACCTACATTCTCCAGACTATTAGAATAtcacattatataaatacatatcaagACATAGactgtgtatatgtttgtgtatacTACATGTGTATATAGTGCACGTATGTATTCAAACATCTGTACATAAAATCCTGTATTGTTTTATGTCCCCAAATTTAAATACCAAGCACCAAGTACGGGTCCCATTTTTATAAGATAGTATTTGTTCTATATGGTAGTATTGTTTTGGATAATATTGATAGTGgcgtatttattttcaataaaagctTTGCAGAGAGCACGTTttgttcataaaaatatatatacaaagtacaagaaacaatacagaataaaaaaataaaaatctgcccACAGTGCAAACAGAGCCTTGGGTGCGTTTCATACGATTCGGTGCACCGAACTTTAAATCTGGACCTTGAAATTGCACTTTTCTTTTACCTCGAAAACACATGAACCTCATGTGTAAATGTGATGATCGTAAGGAACAGAGAGGAAGGTTTTCAAGGCCGGCCTGACTGCCACATCAGCGTGGAGAGGACTAGGGAATAGCCAGCACAATTGTCATAGGAGAAAGGTTATCTACGCAGAAATCAAAGCTACGCTACCCTGAGGACTAGAAAACAGCGCTAACAACAGGTCAGCAAGGATCAGCGCGTAGCCGAGGGCtggatgtgtttttgttctaaTCGCAGTCGTTAAAAGGTGAAGACTTTCCTCTGACGGGGGAAAGCACAACCACATAAGGTGGCCAGATGGGGTGCCAGGGGAAAGCAGTGTCCGACTTGCTGTGCAAGTTCAGCCACCCAGTTCAGGGAAGATGTCTCTCGTTATCTGTTGCGACATGTATTGAGCAGCCAGACATTCAGAAGCAGTAATACGGAAGCCCAGGCTTTGAGTGCCATTGAGTTTTTGGATGTGATActccaataaatattttgtaatgctatTTATGTGGTAACTACTAAAGTGAGAGAAAATCCCTCTGCCTCCCTAATCTCAAATCTGTGTTCTACTCCTACTTGTTTTTTCCACAAGCCGCGGGGAAGCCGGCCAAAGGACACCCAGTGGGTCTTGCttattaaattgaatgtttatctctgtctgtccctctatATAAGAATGTCTGTTTATATACATCTGGGTCTTATCTATACTTTCATTCAACTCATGTTT

Function

GO:

id name namespace
GO:0004953 icosanoid receptor activity molecular_function
GO:0004954 prostanoid receptor activity molecular_function
GO:0004955 prostaglandin receptor activity molecular_function

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04658 Th1 and Th2 cell differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
TU151321 True 1953 lncRNA 0.39 1 3040548 3042500

Neighbor

gene id symbol gene type direction distance location
AMCG00002083 NA coding downstream 79290 2956881 ~ 2961258 (-)
AMCG00002084 NA coding downstream 94395 2935521 ~ 2946153 (-)
AMCG00002077 utp3,LOC102785935 coding downstream 168275 2861912 ~ 2872273 (-)
AMCG00002079 NA coding downstream 183421 2856058 ~ 2857127 (-)
AMCG00002072 foxj3,LOC103362994,LOC101077580 coding downstream 313280 2701238 ~ 2727268 (-)
AMCG00002089 NA coding upstream 1148 3043648 ~ 3066913 (-)
AMCG00002090 NA coding upstream 45044 3087544 ~ 3089884 (-)
AMCG00002092 NA coding upstream 53220 3095720 ~ 3110908 (-)
AMCG00002093 LOC106567259 coding upstream 91608 3134108 ~ 3146480 (-)
AMCG00002095 NA coding upstream 104104 3146604 ~ 3147047 (-)
G120754 NA non-coding downstream 20392 3008901 ~ 3020156 (-)
G120746 NA non-coding downstream 53769 2985573 ~ 2986779 (-)
G120743 NA non-coding downstream 87066 2953273 ~ 2953482 (-)
G120683 NA non-coding downstream 344161 2695581 ~ 2696387 (-)
G120601 NA non-coding downstream 816143 2223343 ~ 2224405 (-)
G120789 NA non-coding upstream 49276 3091776 ~ 3092899 (-)
G120841 NA non-coding upstream 450456 3492956 ~ 3494050 (-)
G120842 NA non-coding upstream 457781 3500281 ~ 3502928 (-)
G120849 NA non-coding upstream 493322 3535822 ~ 3536525 (-)
G120853 NA non-coding upstream 496262 3538762 ~ 3540826 (-)
G120748 NA other downstream 35631 2995508 ~ 3004917 (-)
AMCG00002085 NA other downstream 109530 2921252 ~ 2931018 (-)
AMCG00002078 NA other downstream 192611 2845382 ~ 2847937 (-)
AMCG00002044 NA other downstream 1549981 1486551 ~ 1490567 (-)
AMCG00002094 vamp3,LOC107582408 other upstream 70942 3113442 ~ 3128440 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other upstream 131005 3173505 ~ 3186353 (-)
AMCG00002097 NA other upstream 364985 3407485 ~ 3466461 (-)
G120907 NA other upstream 671367 3713867 ~ 3716252 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other upstream 741736 3784236 ~ 3786544 (-)

Expression


Co-expression Network