G120794


Basic Information

Item Value
gene id G120794
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3113450 ~ 3116424 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU151360
GACCAATAACAGACAAGGGCCACGAGGAAAGTTTGAATCATTTTATTAAGCGACAACAATATAAGCAACCTTAAAGGAGTTAAGTGTTTAAAGGCGACAATATCTATTAATTGCACTTGTTTGTAATGCACAACACATTCCGGTGATGGACCAGGGCCGGGCTTGTTGAACAGTGAACAGgggtgtgtttgtgcgtgtgcgGGGGGGGGGATTTGGCACTTTCTGCATCGGGAACgacaggcacacagacagacagagacagactgacCGCTCCAGAGACTGagattatacacatatatattgagCTTCAGGTGTCGCTGTAATTAAGCGCAGTGAGAACTAAACCAAAAGCGTAAGTTCAGTATCCAGCGAATGCAGATTTACACAAAGCCGAACCCAGCTCTGCATCAGCGGAAAACCACATGATTAGCATCAGCTTAAAACAAACGAGAGCCCGCATTAAAGCAATCGGGGCGTGGCTTCACTTTCAAATCACTGGAGGAGCTGCGGGGGCGTGGAGTGCATTACACACTGCAGACACGCACATGGCTGCTGCGGAGTGAAACGAGGGACACTAAGCTGATGACAGTCTCTGGATTGGCCCTCTCCTCGCTTGAGGCAACGCGGTGTAAAAGGCACCCTGGATTACTTGGCAACTGGCGGTGATATTTGGCAGCTCCCTTGGGACCGATGCGAATCAAGCTCACTCCAGAGTTTGGGACCACCCACAATGCAACTGGTCGGTTGTTCCCAAGCGGAACCCAATATAGAGCGATTGCACTATCTATCAAAATTAACAAGCCGGTTCAATTTAGCTTCTAGTGATTATAAATACTTggcttttacacacacatattcgtAATACAGTCTGTCAATAGACCGGGAGGGAGATATTCGCTTAAAAATCACAACAAAGAGAAGGCTTGCACACGTTAAAAAACACACTAATTATAGATTTGGTAATGCTTCGCTGGAATTCACAAATATGAACAGGCACTTGTAGTCTCAACCCTACATAACGATGTATTGAGATTAGGCACGCAGGTCGGGTCTATGCTCTTGCCGAGTGCTGGGTGTCGTTTCTCTGGAGTGAATCTGAGCTCGGCTCGGCCTGAACGGAGTGATAATGCGTTCGGCAGGAGGAGGCAGAGACTCTCTCGGTCGGCTTTTCAATTAAAGGAAAAGTTGAACAATTACAGGCACTGTTTGAAACAGACCAGAGTATCGTTTGAATGGTAGACCACTTGTCCAGTCACAATcatcattaaaaagaaacaaaacaaaaaaaacacaacaccaccAGTTCAGTATATTTTACAACAACCTAAACAGGAGCTGTGGAATCAGCAGGTTAAATTGGTGCCACCGGCATGCGGgcgtctcctcctcctctccgcTTCGGCACCTTtattcctctcctctcccccgcTCTATGGCGACACGCTCCAGACgatgatgatgatgatgatcaaaACAACTGCTATTAAAATCGCCCACATCTGAGGTTCTTCCACCAGAACTTCCTCTTGAGTTTGGCGGCGCTGGTCTCGAACTGGGAGGCTCCGGCCTGCAGCGCGTCGGCCCGGTCGTCCAGCTCCGACAGCTTCTGGTCTCGCTCCAAGACCTTGTCCACGTTGACGCGCATGATGTCCACCacctgagaggagagagagagacacacacacacggcgtGAATATGAATATTAGAATGAACGTTATAACCCTTACTGTCACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151360 True 1735 lncRNA 0.48 3 3113450 3116424

Neighbor

gene id symbol gene type direction distance location
AMCG00002086 NA coding upstream 26157 3085012 ~ 3087293 (+)
AMCG00002087 NA coding upstream 73427 3025064 ~ 3040023 (+)
AMCG00002088 ybx1,LOC100194660,LOC107733967 coding upstream 108732 2995378 ~ 3004718 (+)
AMCG00002082 NA coding upstream 126671 2967365 ~ 2986779 (+)
AMCG00002081 LOC106572212 coding upstream 161121 2947466 ~ 2952329 (+)
AMCG00002100 NA coding downstream 363420 3479844 ~ 3489633 (+)
AMCG00002101 klhl21 coding downstream 402891 3519315 ~ 3523845 (+)
AMCG00002099 NA coding downstream 445194 3561618 ~ 3562267 (+)
AMCG00002107 NA coding downstream 472943 3589367 ~ 3594982 (+)
AMCG00002106 NA coding downstream 490461 3606885 ~ 3618192 (+)
G120779 NA non-coding upstream 12404 3100278 ~ 3101046 (+)
G120778 NA non-coding upstream 13308 3099607 ~ 3100142 (+)
G120774 NA non-coding upstream 20551 3091794 ~ 3092899 (+)
G120763 NA non-coding upstream 66646 3043640 ~ 3046804 (+)
G120755 NA non-coding upstream 71015 3040567 ~ 3042435 (+)
G120823 NA non-coding downstream 374856 3491280 ~ 3494067 (+)
G120827 NA non-coding downstream 383913 3500337 ~ 3502927 (+)
G120928 NA non-coding downstream 672292 3788716 ~ 3791941 (+)
G120961 NA non-coding downstream 824032 3940456 ~ 3940716 (+)
G120974 NA non-coding downstream 970735 4087159 ~ 4087472 (+)
G120742 NA other upstream 153975 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 259323 2852154 ~ 2854127 (+)
G120518 NA other upstream 1172634 1924022 ~ 1940816 (+)
AMCG00002019 NA other upstream 2120686 682670 ~ 992764 (+)
AMCG00002098 NA other downstream 417390 3533814 ~ 3542177 (+)
AMCG00002152 NA other downstream 2102406 5218830 ~ 5226656 (+)
AMCG00002190 acot7 other downstream 3470230 6586654 ~ 6602608 (+)
AMCG00002215 NA other downstream 4277376 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 5622347 8738771 ~ 8792478 (+)

Expression


Co-expression Network