G120827


Basic Information

Item Value
gene id G120827
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3500337 ~ 3502927 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU151401
agttagattttatttacaaagtattttacaatttacagtttcaCAGAAACAGCTCTCTCTTCCGTCCCACTTCAGTTCCCCCAACACAGCGCCAATTTCTCCCGGCCAGCAAAGACCGCATCAAATAAGTCTGTGTACCAAACTAATAACATTGTTCTcgtttgttgtgtttgtttaaaaaaaagaaaaaagaaaaaaaagaacaagggAACAAACTTGTTTTCCTTTGGTAAATCCTTCTTTGTACAGTAgaatacacatatttacaaaACCACTGAACAAAACCGCCTGCCTCTGCAATTCAATTCCAACTGCAATGCTGCCTAAATTACATCCAGTTTTAAATCCTCAAtaacttacaaaaaaaacatcttcatagAAAAAAATCCACCAGGAATTACGTCTTGGTTACAGATATACTGAGGAAATGTGGCAGGACCaaacgggggaaaaaaaatacatagatcaggatcttcaaaatgtatacatttcaatgtatctCAAACGGCAAATCAAACGCATCTCGTCTCTGAACTCTTGCAACCGTCCAGTAATAAACGTTTTCAATTTCAAACAATGTTTTGAACTAAAAAAGGCTCAGTAACTAGAACCAATATTGggtagaaaatgtaataataaaaaataaaaaaaaaagcctttccGATTTATGGAATCTAAAACACGACTTAGTCTCTTATAACTGCCTTTTGACCAGACAAACCTAAATGTACATTGATATTTAATCAACCAGACTTTCTTCCCCTGCCAGTCAGAACCTCGCATTTAATCTCCCAGGTTTATATTGTCACCAGCTCGTCCTCTTTGCCTGTGCGGTTTCCGGTGTTGTAAGCGCTGCCTCCCGTGTACAAAACCTCACAGGAAATACAGGCTGCAGCACAGagaaagcaaatgaaaatgaaaaacgtGCCCTTAAACGGCTCAAAGGAGACCAAACGCACGGTACCGTCCACTGCCTGGCAGAACAAGATGGTTCTGCACACGAGCACCGCCGAGCAGCGCCTCCGAGCTGCACAGTGAACAccagagaaaaaacagaaccaaaACTTCAGCCCGTATCACGCGTTAGGGTATCCCACCTCTCCTGAACACAGAAGAGGGCATTAAAAAGACCTGCAGCTCAGTCCACGGGCTTAAGGAAGGCAGTAGGGGGACTCGCTCAATCGCTGGCCTATTGAGACGCTGACAGACATGCTTCAGGGGGCATAAAGCTGACAGGTTTTAGTCTGTCCTGTCCCCGGCCTGCGCTTCCCCAAACAGGATGAAATTAAACCCTAAAAAGAGTTTATATTCTTGCCTTCTCTGCTTCAGCAAAAGCTGAGAAGAGTCCCACTCAAAAATAAGTGAAGAGTCAAAACCTAGGTTGTCCGTGAAGTGACATTTTAAGAAGTCACAGAAACCGCCCTGTAGGGAATTCCTTAACACACACTTCCAAGTGTAAGCGATTGTCTTTGGGATACTTATGCTTTTTGTTTAGCATTTAACGATTAAATAAGCATTcatgtgcgtctgtgtgtggggggcggGGAGGGCTTTAATATGCAAGGACAAAAGAAAGGACACTGAATCACTGCTGGACATCCGATAacacagtgcattttaaattcctGTTCCTATCCGTCAAACAAGTCAGGCACTCCTCGGGGTAGATGTGCTTAAAACAGATCCGAAATTTGAGTCCCGAGAACAGGGGTGGTGATCCGGCGTGGGGTATCGCCAGCACCAGCGTTTTCAGGGTGAGAAAGGTCACTGTGAATAGTTTTGTGCAACAGGTGACCACAAGTGCTGGGCCTGTTcccttccccccaaaaaaactcAACCCCCAATCCCCTCTACAGCTCCAGTGACATTAAGGCACAACAGCATTACCCCCTCGACACAAGAGACAACTCGCCTCGGCCACACAAACCCGCTACTTGcttttgtcattaaaaaaataacaccttAAAGTCTGTATACAGAGACAGCAACCATTTGAGCTGTTTTTACTGTTGAtataaccccccaccccccaaaaacaaaactaaaatcatcAATTGTTCATCtatccttaaataaataactcactTCTGAAGCACAGCAGAGGAAATGGCGATACTGTGACTCAAGGAAGGTCAATGGGAGATGGACGCTGATCGGTCAGACCCACTAGAGGACCCCAGTTTATTTCTGGTCAGACGGTACCGAGAACCCCTATACTTGTTCGTGGGACCCCTGTACTTTTCTCTTTGAGCTTCCCTTCGTTTCTTATCAAAGGTGCTTCTTTAACACCATCGCCAATCCAGTCTTCAAGTACCTCCCCCCTGTCAAGTATTCATTTCGcatgatatatagatatacaagTATTTGAAATGGTGTCATTTTCCAGTGTACAGTAAAGACATTCATCTACAGACAGTCTAATCAGAATAATTAAATCACTGTCGGTCTTTCCCTCAGTAGTCTGTACAGCGATTGCCTTGCACACACGGGAGGGCAACCCTTATTTGGCAGGAGGGCGGGACAGggagtaaaaaagaaaaagggggaaaactATATACACAAAGTTCAATGTCGGGGTGTACTTGAAGACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151401 True 2591 lncRNA 0.43 1 3500337 3502927

Neighbor

gene id symbol gene type direction distance location
AMCG00002100 NA coding upstream 10704 3479844 ~ 3489633 (+)
AMCG00002086 NA coding upstream 413044 3085012 ~ 3087293 (+)
AMCG00002087 NA coding upstream 460314 3025064 ~ 3040023 (+)
AMCG00002088 ybx1,LOC100194660,LOC107733967 coding upstream 495619 2995378 ~ 3004718 (+)
AMCG00002082 NA coding upstream 513558 2967365 ~ 2986779 (+)
AMCG00002101 klhl21 coding downstream 16388 3519315 ~ 3523845 (+)
AMCG00002099 NA coding downstream 58691 3561618 ~ 3562267 (+)
AMCG00002107 NA coding downstream 86440 3589367 ~ 3594982 (+)
AMCG00002106 NA coding downstream 103958 3606885 ~ 3618192 (+)
AMCG00002105 NA coding downstream 125524 3628451 ~ 3642159 (+)
G120823 NA non-coding upstream 6270 3491280 ~ 3494067 (+)
G120794 NA non-coding upstream 383913 3113450 ~ 3116424 (+)
G120779 NA non-coding upstream 399291 3100278 ~ 3101046 (+)
G120778 NA non-coding upstream 400195 3099607 ~ 3100142 (+)
G120774 NA non-coding upstream 407438 3091794 ~ 3092899 (+)
G120928 NA non-coding downstream 285789 3788716 ~ 3791941 (+)
G120961 NA non-coding downstream 437529 3940456 ~ 3940716 (+)
G120974 NA non-coding downstream 584232 4087159 ~ 4087472 (+)
G121044 NA non-coding downstream 1077927 4580854 ~ 4581879 (+)
G121045 NA non-coding downstream 1079046 4581973 ~ 4582280 (+)
G120742 NA other upstream 540862 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 646210 2852154 ~ 2854127 (+)
G120518 NA other upstream 1559521 1924022 ~ 1940816 (+)
AMCG00002019 NA other upstream 2507573 682670 ~ 992764 (+)
AMCG00002098 NA other downstream 30887 3533814 ~ 3542177 (+)
AMCG00002152 NA other downstream 1715903 5218830 ~ 5226656 (+)
AMCG00002190 acot7 other downstream 3083727 6586654 ~ 6602608 (+)
AMCG00002215 NA other downstream 3890873 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 5235844 8738771 ~ 8792478 (+)

Expression


Co-expression Network