G120841


Basic Information

Item Value
gene id G120841
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3492956 ~ 3494050 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU151417
gtttttgtttccccatttTTAATCCTTTTGTACATTATTCAGTAGGAGCCGCTTGGCTTCACACATTTCCACAACAGTCATAAACACGGGTATGAAGCACCAGGGAGAGACACTGGCAGTCACTACAGGAAGTCCGGATGTCTTATTTCACAGCATGCGGATGGGAAACGAACGAGGGGATCGACAGCTTTAGCAAATCCCTTTTTCTGACAGACGGTTAAAACATTTGGTTCCCAAAGAACAGCATAGATGGCTGAAGAGACCGAACACATTTCTGTAACCTCTGCAGCGGGTTCCGCAGACCTCCATTAGCGCTGGTCTCGGACTGACTGACCTACAATAACAGCAGTCCAGGGCCGGCGCTGATGTGGGTGAGAAACCCGCCTGTGACGTGTGGAATctgaaggagaagaaaatggGAGGAACagcaatgaaacaaacacagttACACACTGTTTAGCTTCATCACTGATCAATCTGATGTCGAGGCATGTGTCTCGGAGTTACGGGGACAGGGAACAGGCAGAGACTCGGACCGACGCGTCAATCGAACCCCGGAGTAGGCCCCGTCTTGGTCTCTAGTAACAGTATAAATTCTAGAACTAATAGACATGGTTAGgcagtaacaataacaatcagACCATGTGTGGCTCTGGCACAGCGGAGAGGAAGGCTCGACCGTTTCACTGATAAGTGAAGGGGGTGTAGCTTAACGGAGGGGTTCCATTAGtgagaaaactaaatattgacCGTGTTAGACGGGTCGGATCGAAAGCCTAAAGCtacaatgaaaaacatcagGCAGCGTTTGTGAGGCTGGACGTTTCTAATTCCTCGCAGAACAGACCCACATTCTGCGGGTGGCGGGACAGGCAGGGTCTCGCCCACAACCGGGGGATTTCCCGGACTGAGAGAAGTCCTCGCACTAACGGGGAGACGAGGGAAGCGGCTGCTCGGGATGCAAAGCAGAGACGCCAGGGCCGCTGTAAAGGAGCGCCACAGACACGAGCCTCGCTGGGGACACTGGTCTGACTGACTCCCGGGCACCGGGGCAGGTATCGCAGACCGCTAGGGGCGCAGGTCTTAGTCCTTTGG

Function

GO: NA

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU151417 True 1095 lncRNA 0.52 1 3492956 3494050

Neighbor

gene id symbol gene type direction distance location
AMCG00002096 NA coding downstream 218038 3274423 ~ 3274918 (-)
AMCG00002095 NA coding downstream 345909 3146604 ~ 3147047 (-)
AMCG00002093 LOC106567259 coding downstream 346476 3134108 ~ 3146480 (-)
AMCG00002092 NA coding downstream 382048 3095720 ~ 3110908 (-)
AMCG00002090 NA coding downstream 403072 3087544 ~ 3089884 (-)
AMCG00002104 NA coding upstream 2109 3496159 ~ 3498806 (-)
AMCG00002102 NA coding upstream 8996 3503046 ~ 3510980 (-)
AMCG00002103 NA coding upstream 33302 3527352 ~ 3533819 (-)
AMCG00002108 NA coding upstream 147132 3641182 ~ 3661770 (-)
AMCG00002113 NA coding upstream 274105 3768155 ~ 3777213 (-)
G120789 NA non-coding downstream 400057 3091776 ~ 3092899 (-)
G120760 NA non-coding downstream 450456 3040548 ~ 3042500 (-)
G120754 NA non-coding downstream 472800 3008901 ~ 3020156 (-)
G120746 NA non-coding downstream 506177 2985573 ~ 2986779 (-)
G120743 NA non-coding downstream 539474 2953273 ~ 2953482 (-)
G120842 NA non-coding upstream 6231 3500281 ~ 3502928 (-)
G120849 NA non-coding upstream 41772 3535822 ~ 3536525 (-)
G120853 NA non-coding upstream 44712 3538762 ~ 3540826 (-)
G120914 NA non-coding upstream 206442 3700492 ~ 3704364 (-)
G120975 NA non-coding upstream 593058 4087108 ~ 4087418 (-)
AMCG00002097 NA other downstream 26495 3407485 ~ 3466461 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other downstream 306603 3173505 ~ 3186353 (-)
AMCG00002094 vamp3,LOC107582408 other downstream 364516 3113442 ~ 3128440 (-)
G120748 NA other downstream 488039 2995508 ~ 3004917 (-)
AMCG00002085 NA other downstream 561938 2921252 ~ 2931018 (-)
G120907 NA other upstream 219817 3713867 ~ 3716252 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other upstream 290186 3784236 ~ 3786544 (-)
G120993 NA other upstream 720665 4214715 ~ 4219877 (-)
AMCG00002167 NA other upstream 2481675 5975725 ~ 6015393 (-)
AMCG00002223 NA other upstream 4332591 7826641 ~ 7839411 (-)

Expression


Co-expression Network