G120842


Basic Information

Item Value
gene id G120842
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3500281 ~ 3502928 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU151418
TGGTCTTCAAGTACACCCCGACATTGAACTTTGTGTATATagttttccccctttttcttttttactccCTGTCCCGCCCTCCTGCCAAATAAGGGTTGCCCTCCCGTGTGTGCAAGGCAATCGCTGTACAGACTACTGAGGGAAAGACCGACAGTGATTTAATTATTCTGATTAGACTGTCTGTAGATGAATGTCTTTACTGTACACTGGAAAATGACACCATTTCAAATActtgtatatctatatatcatgCGAAATGAATACTTGACAGGGGGGAGGTACTTGAAGACTGGATTGGCGATGGTGTTAAAGAAGCACCTTTGATAAGAAACGAAGGGAAGCTCAAAGAGAAAAGTACAGGGGTCCCACGAACAAGTATAGGGGTTCTCGGTACCGTCTGACCAGAAATAAACTGGGGTCCTCTAGTGGGTCTGACCGATCAGCGTCCATCTCCCATTGACCTTCCTTGAGTCACAGTATCGCCATTTCCTCTGCTGTGCTTCAGAagtgagttatttatttaaggataGATGAACAATTgatgattttagttttgtttttggggggtggggggttataTCAACAGTAAAAACAGCTCAAATGGTTGCTGTCTCTGTATACAGACTTTaaggtgttatttttttaatgacaaaagCAAGTAGCGGGTTTGTGTGGCCGAGGCGAGTTGTCTCTTGTGTCGAGGGGGTAATGCTGTTGTGCCTTAATGTCACTGGAGCTGTAGAGGGGATTGGGGGTTgagtttttttggggggaagggAACAGGCCCAGCACTTGTGGTCACCTGTTGCACAAAACTATTCACAGTGACCTTTCTCACCCTGAAAACGCTGGTGCTGGCGATACCCCACGCCGGATCACCACCCCTGTTCTCGGGACTCAAATTTCGGATCTGTTTTAAGCACATCTACCCCGAGGAGTGCCTGACTTGTTTGACGGATAGGAACaggaatttaaaatgcactgtgtTATCGGATGTCCAGCAGTGATTCAGTGTCCTTTCTTTTGTCCTTGCATATTAAAGCCCTCCccgccccccacacacagacgcacatgAATGCTTATTTAATCGTTAAATGCTAAACAAAAAGCATAAGTATCCCAAAGACAATCGCTTACACTTGGAAGTGTGTGTTAAGGAATTCCCTACAGGGCGGTTTCTGTGACTTCTTAAAATGTCACTTCACGGACAACCTAGGTTTTGACTCTTCACTTATTTTTGAGTGGGACTCTTCTCAGCTTTTGCTGAAGCAGAGAAGGCAAGAATATAAACTCTTTTTAGGGTTTAATTTCATCCTGTTTGGGGAAGCGCAGGCCGGGGACAGGACAGACTAAAACCTGTCAGCTTTATGCCCCCTGAAGCATGTCTGTCAGCGTCTCAATAGGCCAGCGATTGAGCGAGTCCCCCTACTGCCTTCCTTAAGCCCGTGGACTGAGCTGCAGGTCTTTTTAATGCCCTCTTCTGTGTTCAGGAGAGGTGGGATACCCTAACGCGTGATACGGGCTGAAGTtttggttctgttttttctctggTGTTCACTGTGCAGCTCGGAGGCGCTGCTCGGCGGTGCTCGTGTGCAGAACCATCTTGTTCTGCCAGGCAGTGGACGGTACCGTGCGTTTGGTCTCCTTTGAGCCGTTTAAGGGCacgtttttcattttcatttgctttctCTGTGCTGCAGCCTGTATTTCCTGTGAGGTTTTGTACACGGGAGGCAGCGCTTACAACACCGGAAACCGCACAGGCAAAGAGGACGAGCTGGTGACAATATAAACCTGGGAGATTAAATGCGAGGTTCTGACTGGCAGGGGAAGAAAGTCTGGTTGATTAAATATCAATGTACATTTAGGTTTGTCTGGTCAAAAGGCAGTTATAAGAGACTAAGTCGTGTTTTAGATTCCATAAATCggaaaggcttttttttttattttttattattacattttctaccCAATATTGGTTCTAGTTACTGAGCCTTTTTTAGTTCAAAACATTGTTTGAAATTGAAAACGTTTATTACTGGACGGTTGCAAGAGTTCAGAGACGAGATGCGTTTGATTTGCCGTTTGagatacattgaaatgtatacattttgaagatcctgatctatgtattttttttcccccgtttGGTCCTGCCACATTTCCTCAGTATATCTGTAACCAAGACGTAATTCCTGGTGGATTTTTTTctatgaagatgttttttttgtaagttaTTGAGGATTTAAAACTGGATGTAATTTAGGCAGCATTGCAGTTGGAATTGAATTGCAGAGGCAGGCGGTTTTGTTCAGTGGTtttgtaaatatgtgtattcTACTGTACAAAGAAGGATTTACCAAAGGAAAACAAGTTTGTTcccttgttcttttttttcttttttcttttttttaaacaaacacaacaaacgAGAACAATGTTATTAGTTTGGTACACAGACTTATTTGATGCGGTCTTTGCTGGCCGGGAGAAATTGGCGCTGTGTTGGGGGAACTGAAGTGGGACGGAAGAGAGAGCTGTTTCTGtgaaactgtaaattgtaaaatactttgtaaataaaatctaactattgattatttta
>TU151419
TGGTCTTCAAGTACACCCCGACATTGAACTTTGTGTATATagttttccccctttttcttttttactccCTGTCCCGCCCTCCTGCCAAATAAGGGTTGCCCTCCCGTGTGTGCAAGGCAATCGCTGTACAGACTACTGAGGGAAAGACCGACAGTGATTTAATTATTCTGATTAGACTGTCTGTAGATGAATGTCTTTACTGTACACTGGAAAATGACACCATTTCAAATActtgtatatctatatatcatgCGAAATGAATACTTGACAGGGGGGAGGTACTTGAAGACTGGATTGGCGATGGTGTTAAAGAAGCACCTTTGATAAGAAACGAAGGGAAGCTCAAAGAGAAAAGTACAGGGGTCCCACGAACAAGTATAGGGGTTCTCGGTACCGTCTGACCAGAAATAAACTGGGGTCCTCTAGTGGGTCTGACCGATCAGCGTCCATCTCCCATTGACCTTCCTTGAGTCACAGTATCGCCATTTCCTCTGCTGTGCTTCAGAagtgagttatttatttaaggataGATGAACAATTgatgattttagttttgtttttggggggtggggggttataTCAACAGTAAAAACAGCTCAAATGGTTGCTGTCTCTGTATACAGACTTTaaggtgttatttttttaatgacaaaagCAAGTAGCGGGTTTGTGTGGCCGAGGCGAGTTGTCTCTTGTGTCGAGGGGGTAATGCTGTTGTGCCTTAATGTCACTGGAGCTGTAGAGGGGATTGGGGGTTgagtttttttggggggaagggAACAGGCCCAGCACTTGTGGTCACCTGTTGCACAAAACTATTCACAGTGACCTTTCTCACCCTGAAAACGCTGGTGCTGGCGATACCCCACGCCGGATCACCACCCCTGTTCTCGGGACTCAAATTTCGGATCTGTTTTAAGCACATCTACCCCGAGGAGTGCCTGACTTGTTTGACGGATAGGAACaggaatttaaaatgcactgtgtTATCGGATGTCCAGCAGTGATTCAGTGTCCTTTCTTTTGTCCTTGCATATTAAAGCCCTCCccgccccccacacacagacgcacatgAATGCTTATTTAATCGTTAAATGCTAAACAAAAAGCATAAGTATCCCAAAGACAATCGCTTACACTTGGAAGTGTGTGTTAAGGAATTCCCTACAGGGCGGTTTCTGTGACTTCTTAAAATGTCACTTCACGGACAACCTAGGTTTTGACTCTTCACTTATTTTTGAGTGGGACTCTTCTCAGCTTTTGCTGAAGCAGAGAAGGCAAGAATATAAACTCTTTTTAGGGTTTAATTTCATCCTGTTTGGGGAAGCGCAGGCCGGGGACAGGACAGACTAAAACCTGTCAGCTTTATGCCCCCTGAAGCATGTCTGTCAGCGTCTCAATAGGCCAGCGATTGAGCGAGTCCCCCTACTGCCTTCCTTAAGCCCGTGGACTGAGCTGCAGGTCTTTTTAATGCCCTCTTCTGTGTTCAGGAGAGGTGGGATACCCTAACGCGTGATACGGGCTGAAGTtttggttctgttttttctctggTGTTCACTGTGCAGCTCGGAGGCGCTGCTCGGCGGTGCTCGTGTGCAGAACCATCTTGTTCTGCCAGGCAGTGGACGGTACCGTGCGTTTGGTCTCCTTTGAGCCGTTTAAGGGCacgtttttcattttcatttgctttctCTGTGCTGCAGCCTGTATTTCCTGTGAGGTTTTGTACACGGGAGGCAGCGCTTACAACACCGGAAACCGCACAGGCAAAGAGGACGAGCTGGTGACAATATAAACCTGGGAGATTAAATGCGAGGTTCTGACTGGCAGGGGAAGAAAGTCTGGTTGATTAAATATCAATGTACATTTAGGTTTGTCTGGTCAAAAGGCAGTTATAAGAGACTAAGTCGTGTTTTAGATTCCATAAATCggaaaggcttttttttttattttttattattacattttctaccCAATATTGGTTCTAGTTACTGAGCCTTTTTTAGTTCAAAACATTGTTTGAAATTGAAAACGTTTATTACTGGACGGTTGCAAGAGTTCAGAGACGAGATGCGTTTGATTTGCCGTTTGagatacattgaaatgtatacattttgaagatcctgatctatgtattttttttcccccgtttGGTCCTGCCACATTTCCTCAGTATATCTGTAACCAAGACGTAATTCCTGGTGGATTTTTTTctatgaagatgttttttttgtaagttaTTGAGGATTTAAAACTGGATGTAATTTAGGCAGCATTGCAGTTGGAATTGAATTGCAGAGGCAGGCGGTTTTGTTCAGTGGTtttgtaaatatgtgtattcTACTGTACAAAGAAGGATTTACCAAAGGAAAACAAGTTTGTTcccttgttcttttttttcttttttcttttttttaaacaaacacaacaaacgAGAACAATGTTATTAGTTTGGTACACAGACTTATTTGATGCGGTCTTTGCTGGCCGGGAGAAATTGGCGCTGTGTTGGGGGAACTGAAGTGGGACGGAAGAGAGAGCTGTTTCTGtgaaactgtaaattgtaaaatactttgtaaataaaatctaactattgattattttaatctgcAACAAGGGTCTGGTGTTAATTAGCATTGCACACATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151418 False 2605 lncRNA 0.43 1 3500324 3502928
TU151419 True 2648 lncRNA 0.43 1 3500281 3502928

Neighbor

gene id symbol gene type direction distance location
AMCG00002104 NA coding downstream 1475 3496159 ~ 3498806 (-)
AMCG00002096 NA coding downstream 225363 3274423 ~ 3274918 (-)
AMCG00002095 NA coding downstream 353234 3146604 ~ 3147047 (-)
AMCG00002093 LOC106567259 coding downstream 353801 3134108 ~ 3146480 (-)
AMCG00002092 NA coding downstream 389373 3095720 ~ 3110908 (-)
AMCG00002102 NA coding upstream 118 3503046 ~ 3510980 (-)
AMCG00002103 NA coding upstream 24424 3527352 ~ 3533819 (-)
AMCG00002108 NA coding upstream 138254 3641182 ~ 3661770 (-)
AMCG00002113 NA coding upstream 265227 3768155 ~ 3777213 (-)
AMCG00002116 NA coding upstream 286130 3789058 ~ 3794546 (-)
G120841 NA non-coding downstream 6231 3492956 ~ 3494050 (-)
G120789 NA non-coding downstream 407382 3091776 ~ 3092899 (-)
G120760 NA non-coding downstream 457781 3040548 ~ 3042500 (-)
G120754 NA non-coding downstream 480125 3008901 ~ 3020156 (-)
G120746 NA non-coding downstream 513502 2985573 ~ 2986779 (-)
G120849 NA non-coding upstream 32894 3535822 ~ 3536525 (-)
G120853 NA non-coding upstream 35834 3538762 ~ 3540826 (-)
G120914 NA non-coding upstream 197564 3700492 ~ 3704364 (-)
G120975 NA non-coding upstream 584180 4087108 ~ 4087418 (-)
G121039 NA non-coding upstream 1064511 4567439 ~ 4569294 (-)
AMCG00002097 NA other downstream 33820 3407485 ~ 3466461 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other downstream 313928 3173505 ~ 3186353 (-)
AMCG00002094 vamp3,LOC107582408 other downstream 371841 3113442 ~ 3128440 (-)
G120748 NA other downstream 495364 2995508 ~ 3004917 (-)
AMCG00002085 NA other downstream 569263 2921252 ~ 2931018 (-)
G120907 NA other upstream 210939 3713867 ~ 3716252 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other upstream 281308 3784236 ~ 3786544 (-)
G120993 NA other upstream 711787 4214715 ~ 4219877 (-)
AMCG00002167 NA other upstream 2472797 5975725 ~ 6015393 (-)
AMCG00002223 NA other upstream 4323713 7826641 ~ 7839411 (-)

Expression


Co-expression Network