G120853


Basic Information

Item Value
gene id G120853
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3538762 ~ 3540826 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU151434
CTCATGTCTTTCTCATCTAAAAAACTCAAACCCTTACGTGTTCTGGGCCTCCCCCGCTCCCTCATACTCCGACTGGACGCTGATAAGTGTGTGACTCTCGGCCGACAGGGGGTCATCGGGCTCCTCCCCCTCGGCAGCCAGggctgacctctgaccccgcGGCGTGGTGATCCAGCCGGGGGCGGAGCTCAGATTGGCGTGGCTGAGGGCGGGGAACTGGGTGGAGTCTCCGTGACTGAGCTGCACCACATGAGTGACGGACAGCAGGCGGATCAGGTCCACCAGCAACTGGAATCCAAACCCTAGACCAGAGAGAGCAGTAAAGAGTGGTAAATAAACCGCATTTACCACAGAATGCCCCTTACATTTATCATCCAGAACCAGTTGGTCAACCTGCACAAAAAAGACACAGTACAGACCAAGTGGGAGTCTATTAGGTGCTTTATTGTatgagggagaaagaaaaaacggGCGTTGTCCCACTCCGGCCCTGACCTTTGACCCAGCCCATAGTGTTGATGACGATGGGCGTCTCTCTCCTGTAGGAGCGCCACAGGAACTTGACCGAGTCCATGTAGCGGTCCAGGTCCCGCTCGCAGGAGCTCTCCCCGTAGAACACCATCTTGTCTGGGGAGCGCTGGTGAGTGAAGGGcacacctggagagagagagtaaaagTAGGTTCTGCATCCATAGCAGCAAAACTATTCGTGCCACCGAATTGTTTATACAGGGGCTCGAACTACCAGAACGGGcagctgtgattggctgcacGGCCCTGTCCTCTTGCCCACAGTTTCCAGCTTGGCCCGGCAGACTGAACGAAGGGCTGAGACTGAGcacggagagagacagagagatagagatgtACATACCCAGCAGAGGCTCTGTAATAGAGAGCAGAGACAGACAGCCGGGGGGTGTGAACTCAGTCTGTCCCAGATCACACTCCAGATACTCCACACTGACAgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151434 True 972 lncRNA 0.55 3 3538762 3540826

Neighbor

gene id symbol gene type direction distance location
AMCG00002103 NA coding downstream 4943 3527352 ~ 3533819 (-)
AMCG00002102 NA coding downstream 27782 3503046 ~ 3510980 (-)
AMCG00002104 NA coding downstream 39956 3496159 ~ 3498806 (-)
AMCG00002096 NA coding downstream 263844 3274423 ~ 3274918 (-)
AMCG00002095 NA coding downstream 391715 3146604 ~ 3147047 (-)
AMCG00002108 NA coding upstream 100356 3641182 ~ 3661770 (-)
AMCG00002113 NA coding upstream 227329 3768155 ~ 3777213 (-)
AMCG00002116 NA coding upstream 248232 3789058 ~ 3794546 (-)
AMCG00002118 NA coding upstream 276996 3817822 ~ 3824170 (-)
AMCG00002117 NA coding upstream 285350 3826176 ~ 3834827 (-)
G120849 NA non-coding downstream 2237 3535822 ~ 3536525 (-)
G120842 NA non-coding downstream 35834 3500281 ~ 3502928 (-)
G120841 NA non-coding downstream 44712 3492956 ~ 3494050 (-)
G120789 NA non-coding downstream 445863 3091776 ~ 3092899 (-)
G120760 NA non-coding downstream 496262 3040548 ~ 3042500 (-)
G120914 NA non-coding upstream 159666 3700492 ~ 3704364 (-)
G120975 NA non-coding upstream 546282 4087108 ~ 4087418 (-)
G121039 NA non-coding upstream 1026613 4567439 ~ 4569294 (-)
G121111 NA non-coding upstream 1175766 4716592 ~ 4722181 (-)
G121151 lrrc38,lrrc38b,LOC107691331,LOC107568719,LOC107555684,LOC108281009,LOC107685631 non-coding upstream 1569776 5110602 ~ 5116017 (-)
AMCG00002097 NA other downstream 72301 3407485 ~ 3466461 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other downstream 352409 3173505 ~ 3186353 (-)
AMCG00002094 vamp3,LOC107582408 other downstream 410322 3113442 ~ 3128440 (-)
G120748 NA other downstream 533845 2995508 ~ 3004917 (-)
AMCG00002085 NA other downstream 607744 2921252 ~ 2931018 (-)
G120907 NA other upstream 173041 3713867 ~ 3716252 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other upstream 243410 3784236 ~ 3786544 (-)
G120993 NA other upstream 673889 4214715 ~ 4219877 (-)
AMCG00002167 NA other upstream 2434899 5975725 ~ 6015393 (-)
AMCG00002223 NA other upstream 4285815 7826641 ~ 7839411 (-)

Expression


Co-expression Network