G120928


Basic Information

Item Value
gene id G120928
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3788716 ~ 3791941 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU151531
CACGCCGAATAAAAAGACAagactgttttatttataatcgAGAACCAGAATATACAAAGCAGTGGTCAGGcaaccaaaaaacagaaaaataaagactttgTAAAAACCTCGCTCCGAAGGAGAGGCTGCGCGTGAAGCGGGTGGCCGCCCATACCGGCCGGGACCCCCAGGAGACGCCGCTGCGGTCACGCTAATCAGAACCGTCCGAGAGGAGGCTGCTGGGAGTCTAAACCCGGGGCGTTCAGACCACGGAAATCTCAACTTAAActgtacagagaaaaaaaaaaaatatccgaGGAACTCATACAGAACAACGACCAAAACCTTCAGACTTAAGAGGGGTTAATAGACGCGGCCGGGGTCTCTGGACTGGGCGGGTTTCGCTTGTTGCGAGGCAGAGACCCTCGTGGCCGCGTTCGCCATCCATGCAGTCGTACTGGAGCTTCGCCGGGCAAATATGCGGCCGGCGTTTAACCGCACAATCCTCCTCGGCAGGACCGACTACAGACCGGGACGCTCGAGTCCTATTACCCCCCACTTAACTCCTATATCTTTGGTCTTCACTGGGTTTGAGAGGtcaccataaaaaataaaataaaaaaaaaaaatctgaatagtTTCTTACAAAGAGCTGCTCGTGTGTATCTGCTGGTCAGGTAACAAAGTAGAAAGTGTGCTTCATACATGTATAAAAGGTTGGAGACCGGAGCGGGGGTACAGGGACAAAAAAAGCCAACACTCTGATCTTATAAACGGGCCCTATTTGCAGCAATCAGTACAAACTGGTCAGCGACcaataaataacactttacaAAAGGAGGGTTGTGGTGTTACAGGACTCCAGTGCGCATacagaagtttaaaaatgataaaaaacgTTCACAAAAGCACAACCTCTACTGGGTCGGGGTGACCAGGCGGACAGAGCGGGCGGCGAGGGCGGGCCGGGCTCTAGGCTTTCGCTTCGGCCTCTGTGGAGTCGCCGTTTTCCGTCTTCTGCTTTTTTGCGGTTTCCACTTTTTCCTCCTCCTCAGCCGGGCGCTTCACAGGGTGCTCGGCCTCTTCGTCAGCGCCATCCTCTGCCTcgtcctcctctccctctccctcggCCTCCTCgtcttcctcctcatcctcaGGGGTTTCCTCGCCGTGGTCGGCACCGTTCGCCTCCGTGCCGTTGGCAGGTGCGTCTGCGCTGCCGTTCTTctcttccttcttctcctccttcttctcctcagTCTTCTCCACTTCCTCCTTGGCaacctccttcttctccttcaggTCCTTTGGGGTAACCTCGGGGGTGGCGGTGGTCGTGTCAACTGCGGTATCAGCCATTGTGTGCGGACGAAGAAAACAAGCCTCCCAGACAGAAGAAGGTGGTAATTAATGGTTTCTTTTCTTCGGGTGTACGGAAGGCAGCGACCCCTGTCTCGGATGGGAAACTGGCGACTCGGAGGCGAGGAGAGGAGTGAAACACGGCGCTTCAAACCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151531 True 1494 lncRNA 0.53 5 3788716 3791941

Neighbor

gene id symbol gene type direction distance location
AMCG00002109 slc45a1 coding upstream 2172 3779297 ~ 3786544 (+)
AMCG00002111 NA coding upstream 27388 3744848 ~ 3761328 (+)
AMCG00002110 NA coding upstream 57886 3717997 ~ 3730830 (+)
AMCG00002112 NA coding upstream 77995 3708192 ~ 3710721 (+)
AMCG00002105 NA coding upstream 146557 3628451 ~ 3642159 (+)
AMCG00002115 NA coding downstream 5314 3797255 ~ 3815714 (+)
AMCG00002114 NA coding downstream 46422 3838363 ~ 3842411 (+)
AMCG00002119 NA coding downstream 94546 3886487 ~ 3897924 (+)
AMCG00002124 pax7a,pax7,LOC107708260,LOC105907504 coding downstream 191729 3983670 ~ 3987843 (+)
AMCG00002125 NA coding downstream 228287 4020228 ~ 4021143 (+)
G120827 NA non-coding upstream 285789 3500337 ~ 3502927 (+)
G120823 NA non-coding upstream 294649 3491280 ~ 3494067 (+)
G120794 NA non-coding upstream 672292 3113450 ~ 3116424 (+)
G120779 NA non-coding upstream 687670 3100278 ~ 3101046 (+)
G120778 NA non-coding upstream 688574 3099607 ~ 3100142 (+)
G120961 NA non-coding downstream 148515 3940456 ~ 3940716 (+)
G120974 NA non-coding downstream 295218 4087159 ~ 4087472 (+)
G121044 NA non-coding downstream 788913 4580854 ~ 4581879 (+)
G121045 NA non-coding downstream 790032 4581973 ~ 4582280 (+)
G121114 NA non-coding downstream 957187 4749128 ~ 4752334 (+)
AMCG00002098 NA other upstream 246539 3533814 ~ 3542177 (+)
G120742 NA other upstream 829241 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 934589 2852154 ~ 2854127 (+)
G120518 NA other upstream 1847900 1924022 ~ 1940816 (+)
AMCG00002019 NA other upstream 2795952 682670 ~ 992764 (+)
AMCG00002152 NA other downstream 1426889 5218830 ~ 5226656 (+)
AMCG00002190 acot7 other downstream 2794713 6586654 ~ 6602608 (+)
AMCG00002215 NA other downstream 3601859 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 4946830 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 6052264 9844205 ~ 9851312 (+)

Expression


Co-expression Network