G121039


Basic Information

Item Value
gene id G121039
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 4567439 ~ 4569294 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU151682
TGATttcgtgtttttattttagaattcaagttaaaaaaaaaaaagttatattacaAAACGGTTCTTTTGATAAATACAAACTTTAAACAGAGTTgtatacatgaaaaacaGGGCTCGGGGCCCTAGCGGTATAGACTCGGTGACACCTCAGAGCTCCAGCCTTCATCTCGCttacaaaacaaaccttttcCATGAGTATTGAAATGCTTGCAACGTAGTTATAAGTCACAGTCAGAAGTGATTCCAGCAAAAAACAGAATATGTACTGTGGATGTACTGAGTATGTACACCAAGCTGGTTAACAGCGGTTTAATTGCAGCATTGCTtcggttttcattttcagtgtgaaAAGAGGAAACTAAGATCTGTGGCAAGCTGAGGCAAACGCACCTGTAAAGTTGATGTAAAATTTAATCTTAAAGTCATCACAGGGGACGGTTAACTCAAAATAGTCATTTTGAACCATTCAGTATGTAAGTACCGATCTAATTGTGACAGAAGTGTGATATGACCCATCAGGTGACTTAAAACTGTAATATCTTCTTGAAGATAGAGTGAGATGACAAATACAGAACAGGCCTGTATTGAGCGAGTCAGTGAAGGGGAATGACAGACTCTGAgtttctttttatctttattcTGAATTGTGTCAAAAGAACagtgaacaaaaagaaaaaaaactgatctTCGAAAGAGCCATGAGATGCGTTGTCTTTGGAAACCAGCCGTTAATCACgaaaacatttaacacacaaatgaaaatggtgATGAaaaagaggaggggagaggagctGTAAGAAAGGGACCGTAGTGAACAGAAGACCACTTGAATGACAATTAAAAGTGATGAGAACGAGATTGAGGAACAAGGACAGGAATGTGTAGTTGACATGCATTCTGGCAGACTCACTTCTTTGTGGGAAGTGGAAACCTCACTTAAAGGAAAACAGACCAATCACCGAAACGTCATGAGCACccttaaaatgtacagtaaggCAGAAGCACCAttgcaagtgttttattattgtttgcagGGCCCTGACAGAGAACGTTCACTTCGCCTGGACCAGGACTCTGTAAACTAGCACCAATTTACCAGGCCAACCTTGGCCTGCTGAAAATGATTCAgcttatcattaataataaaagttcTCGTGTATAAACAATGAAACCCCGTGTcttagaaatcaaaatataaatatacgtttaaaaaataataataaaataaatccaaaacaCCACTGGATGCGAAGGACATACAGGTAATGGCTTGACTATTCACATTTCCTAATGAGAAAAAAGTTCTCATTGCTGGACATCCATCAAAATGTAGCTATGAACAGTTTCGGTGACTCCAGCGTGCCTTTGTGCCGTCACAGAAGCCCCTGAAGGTGTTGAGTGCACTCCCGTATTTCCATCCACATAACGTCACCACTACAGGGTCATCCAAACACGAGGGCCTCTCCGGGACCCTAAAAAGGGAAGCACcgttcacacacacaatgggaAGCCCTCCTGACCCGGGTGAGGTTTTTGTGCCGCAGTGGGCCGTGCAGATCTCAGAGTCTGGGCGTGAGCGCCGGTGCCAGGACCACCTCACTTGTTCGGATGCCATTTTTGCGCTGTGAGGGAGGTGGCCGATCTCGCCCCCCACCCCAGGCGCGGCTAGGAGTCCTTCAGCATGCTGATCCGGGCGTAGATCTTGAGCGCGGGGCCCAGCTTGATGTTCATGGCGCTCATGAGATGATCCTCCTTGAGCAGCAGCATGGCCTGGCCGTCGATCTCCTGCGAGCGGAACTCGTCGGCTATCTCCTGGCAGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151682 True 1821 lncRNA 0.44 2 4567439 4569294

Neighbor

gene id symbol gene type direction distance location
AMCG00002132 glut1a,LOC106583009,LOC106565867,LOC107569806,LOC107666081,LOC107549315 coding downstream 144163 4414282 ~ 4423276 (-)
AMCG00002131 NA coding downstream 314042 4220002 ~ 4253397 (-)
AMCG00002120 mrps16 coding downstream 620884 3945137 ~ 3946555 (-)
AMCG00002122 NA coding downstream 647098 3919233 ~ 3920341 (-)
AMCG00002121 NA coding downstream 649252 3911198 ~ 3918187 (-)
AMCG00002136 NA coding upstream 1682 4570976 ~ 4579172 (-)
AMCG00002139 NA coding upstream 24858 4594152 ~ 4600114 (-)
AMCG00002138 NA coding upstream 33112 4602406 ~ 4636492 (-)
AMCG00002137 NA coding upstream 82001 4651295 ~ 4673352 (-)
AMCG00002141 NA coding upstream 172195 4741489 ~ 4747439 (-)
G120975 NA non-coding downstream 480021 4087108 ~ 4087418 (-)
G120914 NA non-coding downstream 863075 3700492 ~ 3704364 (-)
G120853 NA non-coding downstream 1026613 3538762 ~ 3540826 (-)
G120849 NA non-coding downstream 1030914 3535822 ~ 3536525 (-)
G120842 NA non-coding downstream 1064511 3500281 ~ 3502928 (-)
G121111 NA non-coding upstream 147298 4716592 ~ 4722181 (-)
G121151 lrrc38,lrrc38b,LOC107691331,LOC107568719,LOC107555684,LOC108281009,LOC107685631 non-coding upstream 541308 5110602 ~ 5116017 (-)
G121152 NA non-coding upstream 558744 5128038 ~ 5137006 (-)
G121188 NA non-coding upstream 658380 5227674 ~ 5228131 (-)
G121271 NA non-coding upstream 1288707 5858001 ~ 5861642 (-)
G120993 NA other downstream 347562 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 780895 3784236 ~ 3786544 (-)
G120907 NA other downstream 851187 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 1100978 3407485 ~ 3466461 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other downstream 1381086 3173505 ~ 3186353 (-)
AMCG00002167 NA other upstream 1406431 5975725 ~ 6015393 (-)
AMCG00002223 NA other upstream 3257347 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 5039456 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 5188131 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 5261225 9830519 ~ 9833224 (-)

Expression


Co-expression Network