G121114


Basic Information

Item Value
gene id G121114
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 4749128 ~ 4752334 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU151783
tttttttagattgttttattaaaagcgTGTAGtgataaaaatatgaattattaagTATACAAAACATATAACACATCCATTgatattgtaaaaaaatgaaattcttGGAACCactttaaataagaataaagaCTTGTGAGAAACTGCAGCCACTGTAACTTTGACAAAACAGTGAAGAAATAGTGACAGTAGGTGTGCTTTTTCAAAGACAATGTTAAGCAGATACAACCTGCCCTGTAACTTACAGTAACTGTAGGTCAAAGCTGACATTTCAACAGcagaaaatagttttgaacAGCATTGTTAAGGACACAATCCAGAAGAAcgaaaaatacaagaaaacatacttgtaaaaaatacaactttccTTTTTACTTGGGCTTGGGCTCAGGGAACAGAATGAGGATTgatacaaatgtacacatttattttagggAATATATCTTTTATAAagtgtcagtgtttttctttgtaatatCTGTTTTTCTCCATAAAGATTTGGTTGTGGTTGTGCCGTGCTGAGACTGGTGGTGTTTTCAATAGGTGTTTACTATCCAAATATGTACCTACCAACTAATAGCAGGACATACACAAACCatgcattaaaacaagtttacacaaatgtatatatataatatatagtctTTAAGGATCAGGAGCGTTCACAGCTCAGCAGCCGGTGCACGCAGCGAAGGCACAGATCTCACAGACATCAGGCTCCTCTGCCAAGAGAGCAGTCTGTAGAAGGACATGCCGGGTCGTGAGCTCTGGCACAAGGGCAGGAACTCCGCAGGCAGGTCTGGGTCGGAACAGGAGGCTGGCAAGCTTGTCTTGGCCAGACGGGGGTTCTTCACAGCACTGGCGTCCATCACCTCCTTCAGCTTCTTCACAGCCTCCAAGGAGAAAGTGAAATCCCCTTCTTCACCTGCACTGCATCTGAAAACACGCAAAGTGCCACGAGGCAGAACACAGTTGCCAGCACACACTTCATGATGACGCTCCGGTTAGTCTTTCTCGTGACTTTGTTTGTCCTGCTTGTGTATTTCAACAAAGCTGTTTCTGTTGATGTTTCTGCCCTCCGCCAGCTCATTCCCTCCTTTTAAAGTCTGGCAGATTACTCGATCACCTTGTAAGCGCACGATTGGCTAAACGGTTATGGACGGAGGCTTTCCGAATGGTTAGTGGATAGCTATGGCATTGAAGTTTAATGGTGTCATAAAGGGgaatttgtgttttcagtgatCTCATCTGTGTCAGGTCTCATTCCTGCCCATAAACGCAGCCCCCTGCTGTGTCTACAGTGAAACG

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU151783 True 1308 lncRNA 0.42 3 4749128 4752334

Neighbor

gene id symbol gene type direction distance location
AMCG00002140 LOC107727752 coding upstream 27197 4690966 ~ 4721931 (+)
AMCG00002133 NA coding upstream 162270 4584435 ~ 4586858 (+)
AMCG00002134 NA coding upstream 179860 4562912 ~ 4569268 (+)
AMCG00002135 NA coding upstream 191753 4554678 ~ 4557375 (+)
AMCG00002130 kcnab2a,LOC108431628,LOC108255041 coding upstream 529251 4192660 ~ 4219877 (+)
AMCG00002143 NA coding downstream 36178 4788512 ~ 4791668 (+)
AMCG00002145 LOC102295218,LOC102203423,LOC101487531,LOC102781222 coding downstream 210720 4963054 ~ 4967720 (+)
AMCG00002146 ephb2 coding downstream 245211 4997545 ~ 5000508 (+)
AMCG00002148 ephb2,LOC104917933,LOC108439490,LOC102781222 coding downstream 262416 5014750 ~ 5022684 (+)
AMCG00002147 LOC106565894,LOC106582986 coding downstream 281976 5034310 ~ 5036785 (+)
G121045 NA non-coding upstream 166848 4581973 ~ 4582280 (+)
G121044 NA non-coding upstream 167249 4580854 ~ 4581879 (+)
G120974 NA non-coding upstream 661656 4087159 ~ 4087472 (+)
G120961 NA non-coding upstream 808412 3940456 ~ 3940716 (+)
G120928 NA non-coding upstream 957187 3788716 ~ 3791941 (+)
G121176 NA non-coding downstream 449068 5201402 ~ 5202462 (+)
G121178 dhrs3 non-coding downstream 450515 5202849 ~ 5204614 (+)
G121187 NA non-coding downstream 475340 5227674 ~ 5228099 (+)
G121198 NA non-coding downstream 491375 5243709 ~ 5275923 (+)
G121228 NA non-coding downstream 721802 5474136 ~ 5570247 (+)
AMCG00002098 NA other upstream 1206951 3533814 ~ 3542177 (+)
G120742 NA other upstream 1789653 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 1895001 2852154 ~ 2854127 (+)
G120518 NA other upstream 2808312 1924022 ~ 1940816 (+)
AMCG00002019 NA other upstream 3756364 682670 ~ 992764 (+)
AMCG00002152 NA other downstream 466496 5218830 ~ 5226656 (+)
AMCG00002190 acot7 other downstream 1834320 6586654 ~ 6602608 (+)
AMCG00002215 NA other downstream 2641466 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 3986437 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 5091871 9844205 ~ 9851312 (+)

Expression


Co-expression Network