G121151 (lrrc38,lrrc38b,LOC107691331,LOC107568719,LOC107555684,LOC108281009,LOC107685631)


Basic Information

Item Value
gene id G121151
gene name lrrc38,lrrc38b,LOC107691331,LOC107568719,LOC107555684,LOC108281009,LOC107685631
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 5110602 ~ 5116017 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU151835
ttcttctctttttttcatttttccatttttttactaaacatatacacatatatatatccATCTTACAGTGTTTTCGTTAGTTTTACAGCATGGCTATTGGGATTTATATTACTTAAGCAAAAAGAGTCCATTTTGGTATAAATAGGAACAGTATAAAATGCTAAGAACAATATCATATTATTAGTTATAACAAAGGTGAGATGGTACCTAGAGATGCACTCACAATGTGTAGCCAGTAAGATTTGCCAATTCTCTTCTGCTTTAGGTTTGACGTCAATGTACTCGGTAGCAGCATATTGGGAGATATTCATAAAGAGTCAGGATGCACCGAGTCCGGCGCACGCCCATGCTTTATGAAGACAACCCACACTAAGTACACCATGTTCGAAGACTCAATTTCATTATCTGCTGTTTTGCCTGTCCTTTCATTTCTTAGTGGCTCCATATCCTGTTCTCCTTGTTCCTGCTGTTTTTAATCACTATCTGTCAGATTACAGactcccccccaaaaacacaaacaaatatctaACACAACCATATCAAAGCAGATTGTCAGGAAATGCAACGGGGGAAGCAATTTGGTGTTACATAGCGCCCAGCAGCCCACAGATATAAGGGATGCCCCCTCCCTACTCGTCTCTCCTCCGGCTTCATGCTGGGATATCTTTCCTACAGACATTTGGCCTGAAATTGATCGCTGGACGAACCACTGGAGCTCAATTGCTCAATCACAGGATCTGAACCCAGTAAGGAATGACATGGCAGGAAAAAGCAGCCGACTCAAACTCCCCTTTCAGGAAGTGGAACAAGGATGTGGAAAAGTAACAGTAGCATAGAGGACTCACTCTGTACCgtctttataaaaaaatatacatatgaatCTGAAAGTagaatcaaaaataataaaattacatgtcaaaaaagttaattcgttttttcttttgtattatcCTCAGTATCATCGTTATTACTATAAAGTcgcataaataaaaataaatgaaatccatAAGGGATGGCGGGGGATCGGGAGTGGGGTGGGGAGTTTCGGGAGAGGGATGGATTGCGCAGCATGCAACAGTTTGCAGAGAAGTATTTCAAAGAGcgataaaaaaatacagtgattCACTTCAAAATACAGGTACATTAATGTCACTGAAACTACACAGTAGTTATACTTTGGCTATGATGATGGACAGTCTAATTCTATGACAGAGGCCAGCCATTGCACATACGTGTTGCTATTCGCTGCCTTTTCTAGGAGAAGAGAGTTCTTCCGTTTAGGAGTTACAGAGTATAGGGGATGTGTTCAACGCCTCCATGTTCATTCAGTCCCAACACACACGCACCTCAATGTGCAGGTCTCAGAGGACGACGACATGCGAACGATAACAGTAACAAGATCGACAACGACAACGACAACAAATGGCCCCGATCATCAATATTATTCTCCAGATGAGTTTTCAAACACTGGAGTCTCTACACACACCGTCAACACTGTCACAACGCTCATCTGACACAGGGGGCCGCTGTGTAGAAATGTCGCGCCCCTCCGACATGACtgtgacatttaaaagcagGATATTGAAGACACTGCTTCACAATGCCGCCAGCGCCGCCACTTTGGTGGGATTCTCCCGACTCACAGACACGTGACACCAGACAGgaacagtcacacacagcagGTATGAGAGAAGAGTAACTACAGTGGAAGTTACAGCACTCGGTTGTACCTGGATTTTGAACGTGTCTCCTGGCTCTGCTCAAAATCTGAAGGGGAAGGTTGGGACCTGACGGAGAATCTCTCACAGACTACAAACTTGTGCAGCATGAGTAGGTCCTACGGACAAATCATTCACAATTTAGGGGTTGCAAACCAAACACTGCTGCTCTGTAAATAGCTTTCCAAGGTGTAGGACATGAAGGTTTAATTCGGGAACAATTGGGCATTCGGCTTTCGTTTTGCTATGTATCCCTTGGTCAATATTACATCGTCTATATGTTCTCTGTACGTCCTTGTCAATAAATCAAGTCAATAAATCTACCTCCCAAAAATCAAACACTAAGAGAGTATACCATCAGacacatttcacaatgcatCCATGACTTCAACATGATTGATTAGCTATCCCATATCTATTGAGTTTTGATTTACATATTGCGGAATGTCAGTTTAAGTCAAACTAATATATTTCTCAACTCTCAGGATCTCCCAAGTTTAAATCCAAATCCCTTCTGGAAAGACTGAAATTAAATGGGTCGTTAAATAACATCGTCAATAGTGTTTCCCGTAAGCTGACACAACCTATTTCACTACTGGATCGTCCTTGCATTTTGGTATCCTATCTTTCTGATCTTCTTTTCAATTATGTCATTCCATCcgtttttaattacaaatgcaatcCTGACATCGTCTCCTTGAAGACCCCTATGATTCTGAGCTTCACTGCTGTCCGGTGGAGGGAGTGAATGTGGGAAGATCATTTCGTGAAAGGCTTTTTAGCCCAGCTTCCCCATCAATCAATATCAGAGAGTAGTTACACAGAATCAATGTGAATAAGCAATAATTCAGTTTAGCAACCCCTAAACTAAAGTAAGACTGATGTGTTCCTCAGAAATCAAAATTATTTCATTACTATAACATGGTCTGGAAGGTACAGAGCATGAAATCAAAACTCATTTTGTTGAGTACAAGGAGCATCTTGGGCCAAGATATGAGTCCATGGGTTGTTATGCACAAATCAATGCTTTTATGATGTGAAATCCATCGAAACGACACACTCAGATAAGGTCAGCATGCAAAGCTTTTGGCCTCAGcaagaaataaagcaaacagacaaacagacaaacagaccaacaaacagacaaacacaagaTTCTGCTTTTTGGTCCAATATTAACCCCATGGTGATGTGAGACAAGGCCATAAATATGCTTTTTCCCCAGCACTTTAAAATAGGTAACTTATTCAATAGCACCACCTACTAATGAAACATAATCTCCTATGCGGTTAAAACCTCGGCATGATCCACAATTACACACACCTTTAACCCTTTCCTAAGAGTTAGTATTAAGTTCATAGCTTGATTAGTTCTAATTCATTCAGACGCCGTTCACTTGGAATTGCCTTCaaattaatgacattttaatacacagtaGGACTCACACAACCACTTTGATGGCAACTCTATCCATAATCTCTAAATTAATCGTTGGCAGACCTGGGcaatttcagttaattaaatggGTCACACGTTGCAATTATCGGTGCCTCTTCTTAATGAACTGATGTATGAATACTGCAGCAATAACACATGGATAACTCATGCACTGAATCTGAGATCTGCTGTTCATCACATCTATGACAAGGTCAGAGTGAAGGTTAGGGACAGGGTTTCACACTTGTTTTCAGGGACAGGGCTTGTACATCAGATCTACATCAGAAGTCAGTGAATGTGCATGAGGCGATCGTGTGTTATTCTTGTGGGATTCAGACTCATTTATTAAGAATCGGTGAccattattataaagtgttgcCAATAAATGGAGCCAAAGAGTCACAGAACCACTTTAAAAAGTGACCCTTTCACCGCTAAAGTGCAATTTGTGCTAATtgtaaagcatttcaaaatggtCAAATCATGATCACtgagtttaatttgtctttgacTGTATTTGAGATTGAAACTGATGTCTTTGTAATAGTAGTGCTGATTGAATTCACAAGTATTTTCTGAGagagttttttgtttagtttgtttggtGGTTGGGTGGATCTGAGCATTAAACACTAAGAGGCTCAGGAGTGGAGATTAAACAGTCAAAGTACTTGTTTTTGTTGCCTTTAGcgtcaaatgtttatttgatatttaatgCTCTCATTTCTTAACCTTTGAAATAGATGTGAGTTGTAACTGGTATCCAAATACCACACTGGTACACACTCACAACTCCACAACCTATGACAACTTGTCTGTTGAGAATCCTTGAGAACTTTATGAACcagttttttctttatgtagAAGGATGATCAATTTGTATGGTTGGTGTCTCCTGCTCTCAGATATTGCAAACATCGGTCTAACGGCAGAGAGGGTTATGGTTTCAAAGTTTGGCAGTTTTCCACAGAACTCGGCATCCTATGCAACCAGGCCTCCCACAGATACAATGTGACAGCTCCCATCGTGATAGTACTTCCCCATTGAACTGTGCATCTCCTCACTCACAGCTAACAGACTGCTGTTGCTCACACCAGAATCTATACATTAAGCAGATTGGAGACAAGTAGGTGAAGATGGTTGTGTAGTCCAATTAAATCCAACTGAAATATCAACTCTTTCACCTTAAAAGCATTATATTTCAGGTCAGTCTCCCTctcaactgtttatttttgattttctgtttgtttcctgATTCAGCTGAGGTCTGTTTTCAATCAAAAGTTTGGCCCACCTTTCAATCGCAATTCCCCACCTGATACTGATTTTAATTTCTCCTGGTAATCAGGAAGTCAAGATGAAAAGCCAGTTTTTGCCActggcaggtgggtcaaagttttgattgaatccggggcttggtaataataataataacaataataatacgtaTCTGTTACATATGGTCCTTTGGTCGTGCATTTTGAAGTTCAGACACACAATGGCAAATCGCACAAAGCTGGGGGTTCTCCTGTGATGGAGGAAGCTATCACAAACAAGTCGAAATGTGTTGTTTGTACAAGAGGCGTGATTCCATAGAATACTGGCTAACGAATACAAGACACATTTTAATCCCATCCTCATGGAGTGATTCATTACCCACAGATGTATCCCAGCACAATTCTGGGCAATATTATATAACAGCCACTGAATTAACAACACTGACCCTGTTCACCTCTTGACCCAAACCATCTGGTGCCTTAGATTTCACATGATAAGAGCATTGAACGGCTGCGTTTGTGTTTTTACTCTCGTTGCTTTTCTCAGAAGAATAAGGCGAACAGGGACGGGGACAGGGGTGAGGGGGTGAGGGGCTCGATCACTGGGAGAAGCAGCCTGGCTTATCCGCGGCCCCCAGAGCCCAGCTTGTCTGTGGCCCCCCAGAGCCCCAAGCCTCTCTCAATCGTCATTCTCCTCCTCGTCGCTCTTGTTGGCTTTGCTCCAGCGCTGGAAGCAGTGCACAGTGGAGGCTAGGAAGAAGCTGGCCAAGATGGCCGCCACAGAGACCGAGATGCCCGAGAAGATGATGATGAGATAGTCGGTGAGGGTGAGGGTCAGCTGGCACTCGCGGAAACTGTCCTCTGAGAGCAGGCTGAGCGCCACCCTGCGGCCGTCGACGGGGAGGGAGCACTCCATACCGTCCACTCCTGTGgggagagaaacaaagagaagttATGCGCTCTG

Function

symbol description
lrrc38b Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human LRRC38 (leucine rich repeat containing 38).
lrrc38 Enables potassium channel activator activity and transmembrane transporter binding activity. Involved in positive regulation of voltage-gated potassium channel activity and potassium ion transmembrane transport. Part of voltage-gated potassium channel complex.

NR:

description
PREDICTED: leucine-rich repeat-containing protein 38

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151835 True 5396 lncRNA 0.42 2 5110602 5116017

Neighbor

gene id symbol gene type direction distance location
AMCG00002144 lactbl1,LOC106582988,LOC106565891 coding downstream 299240 4797389 ~ 4811362 (-)
AMCG00002142 NA coding downstream 358270 4749168 ~ 4752332 (-)
AMCG00002141 NA coding downstream 363163 4741489 ~ 4747439 (-)
AMCG00002137 NA coding downstream 437250 4651295 ~ 4673352 (-)
AMCG00002138 NA coding downstream 474110 4602406 ~ 4636492 (-)
AMCG00002154 dhrs3,LOC106582983 coding upstream 85401 5201418 ~ 5214408 (-)
AMCG00002153 NA coding upstream 136358 5252375 ~ 5254786 (-)
AMCG00002155 igsf21,LOC108438574 coding upstream 147990 5264007 ~ 5286782 (-)
AMCG00002158 NA coding upstream 644817 5760834 ~ 5786032 (-)
AMCG00002157 LOC106565901,LOC108438575,LOC104956748,LOC102783840,LOC107751159 coding upstream 688825 5804842 ~ 5827525 (-)
G121111 NA non-coding downstream 388421 4716592 ~ 4722181 (-)
G121039 NA non-coding downstream 541308 4567439 ~ 4569294 (-)
G120975 NA non-coding downstream 1023184 4087108 ~ 4087418 (-)
G120914 NA non-coding downstream 1406238 3700492 ~ 3704364 (-)
G120853 NA non-coding downstream 1569776 3538762 ~ 3540826 (-)
G121152 NA non-coding upstream 12021 5128038 ~ 5137006 (-)
G121188 NA non-coding upstream 111657 5227674 ~ 5228131 (-)
G121271 NA non-coding upstream 741984 5858001 ~ 5861642 (-)
G121274 NA non-coding upstream 755651 5871668 ~ 5874136 (-)
G121288 NA non-coding upstream 817641 5933658 ~ 5937833 (-)
G120993 NA other downstream 890725 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 1324058 3784236 ~ 3786544 (-)
G120907 NA other downstream 1394350 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 1644141 3407485 ~ 3466461 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other downstream 1924249 3173505 ~ 3186353 (-)
AMCG00002167 NA other upstream 859708 5975725 ~ 6015393 (-)
AMCG00002223 NA other upstream 2710624 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 4492733 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 4641408 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 4714502 9830519 ~ 9833224 (-)

Expression


Co-expression Network