G121198


Basic Information

Item Value
gene id G121198
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 5243709 ~ 5275923 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU151892
AGAAGAGACCTGCCGCCAGTTCCTCCGCCGGGCAGCAGGGGGCGAGAGAGGCTCAGGCGGTCCTCTGCTGGGGATAAACGAGTCACTACCAAGTAAACAGTCTCCGTTTGCTTATTGTACAGaaaatgaagaaaacctTGAGGGCTAGATTTCTGGTAAATAAAAGGCACAGAAACTAATACGACAACCAATCGATCATCACTGGGTGTCTGAGTGATTGTTGCTGTAGGGTATCGTGAGATTGAGCAGGGCCAAAATGAGGTGGCTTGCCTCCTTGTTTTCATCTGCTCCAGCACCGTACAAGCCGAGAGTATAGTTCAGGGAGGGACAGACGGCCAGGAAGAGGTCCCTTGGCCAGCAGGATTACCCTACAAAAGCTTATGCTTCAGGAATCAGAGGATGATGTCATGCGCTGCCAAAAGCATCCCGAATCATCACAATGAGCAGCATCCGGGGCGTGTGGAAGCGCTCCACTTGTCAGTCCGGCGAAATTAAAGCAGCACTAAATGTGTGTCTGGCAGATGAAGCAGTGGAAACTGGGAATGTGTTGTTCACCCAGCTTTGACAAAGACACAGTGTTTAGTGTAGTGTTTACAAGGAAGTAGGGACATTTAGCAGGAAAGGACAAACCCTGCCATGTTCTCTATACCTGCACAGTGATTAAACATCCTTATACTgccctttttaaatgcatttttcccgTAGAACACTCATTAATACCGTAAGCTAGGTTTATTTATGATCTGCAATACACTGTACCTTCCACAGAGATTAAGAACATAAATATGCAggggaaactgaaaatgtgaagaCGCCAGTTGGCACTTCTCCTCCTTGGTAATGTAGCACTTGAACCCCCCCCCTCTTCAGTCGCAAAATTTTTGATCCATAAGAATCTGAAGTAAAAAACATACTCCCT

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU151892 True 919 lncRNA 0.47 4 5243709 5275923

Neighbor

gene id symbol gene type direction distance location
AMCG00002151 NA coding upstream 3009 5238311 ~ 5240700 (+)
AMCG00002150 vps13d coding upstream 47616 5128059 ~ 5196093 (+)
AMCG00002149 lrrc38,LOC107685631,LOC106582984 coding upstream 153837 5084895 ~ 5089872 (+)
AMCG00002147 LOC106565894,LOC106582986 coding upstream 206924 5034310 ~ 5036785 (+)
AMCG00002148 ephb2,LOC104917933,LOC108439490,LOC102781222 coding upstream 221025 5014750 ~ 5022684 (+)
AMCG00002159 NA coding downstream 494329 5770252 ~ 5776525 (+)
AMCG00002156 rcc2,LOC107687402,LOC107712686 coding downstream 585515 5861438 ~ 5872711 (+)
AMCG00002161 NA coding downstream 638348 5914271 ~ 5916094 (+)
AMCG00002160 NA coding downstream 643703 5919626 ~ 5938059 (+)
AMCG00002163 dvl1,LOC102777744 coding downstream 663962 5939885 ~ 5962194 (+)
G121187 NA non-coding upstream 15610 5227674 ~ 5228099 (+)
G121178 dhrs3 non-coding upstream 39095 5202849 ~ 5204614 (+)
G121176 NA non-coding upstream 41247 5201402 ~ 5202462 (+)
G121114 NA non-coding upstream 491375 4749128 ~ 4752334 (+)
G121045 NA non-coding upstream 661429 4581973 ~ 4582280 (+)
G121228 NA non-coding downstream 198213 5474136 ~ 5570247 (+)
G121402 NA non-coding downstream 1001595 6277518 ~ 6277900 (+)
G121417 NA non-coding downstream 1051274 6327197 ~ 6327481 (+)
G121526 NA non-coding downstream 1517053 6792976 ~ 6798043 (+)
G121680 NA non-coding downstream 2285143 7561066 ~ 7562732 (+)
AMCG00002152 NA other upstream 17053 5218830 ~ 5226656 (+)
AMCG00002098 NA other upstream 1701532 3533814 ~ 3542177 (+)
G120742 NA other upstream 2284234 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 2389582 2852154 ~ 2854127 (+)
G120518 NA other upstream 3302893 1924022 ~ 1940816 (+)
AMCG00002190 acot7 other downstream 1310731 6586654 ~ 6602608 (+)
AMCG00002215 NA other downstream 2117877 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 3462848 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 4568282 9844205 ~ 9851312 (+)
AMCG00002294 rere other downstream 5291989 10567912 ~ 10604839 (+)

Expression


Co-expression Network