G121274


Basic Information

Item Value
gene id G121274
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 5871668 ~ 5874136 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU151999
ATTCCAAACATAATCCAAGGGAGAAGTGGTTTTTAAAACAGGACAACTCAGGTACAACATGAACCTTTTTTATTAACATctcaaaagaaataaaacaatttaaaaaaatcccaaaataacaagaaacagGCTAACTGACCCATGTAACACCGGCCTGAACAAAACTGATCACTGCTGTTGAAGAGTAGATCCTAATAAAGGCGCAATGTACTGTTGGCAAACAGGTCCCTGAAACAAAAGAGCTGGACAGTGATTTTCAATGGGAGGGAAACCCCCCAAATTAATTCCAACACACATGGGGGGTTTCTAGAGGTCAGACAACATTGTATTTTGGAGATAGAAGAGtttcatgcatattttatttttaaaaaggtattttttttttccaggagaATGTCTTTTTACATTGTGTAATCAACAGCTATgccaaattaatgtttttttgttgtgtttttttaataaagcaaaagcaCCTAAACAAAAGTAGCACTCTATCCTTGTAATCAATTGATATTACCACAATGGGCTTCATTAGCAGAGAGCTCTCTTAACATCAGGCCTGAGTTTCATTAAACGTGTGTGACGCTATCGCCTTGTAACCCAGAATAGGAAAGGTTGTGAAGTCAGTTACCATCACTAGCCAAGAGGAGAAATTAACAGATGGAATGTAATGGCACCCAGAGAGCGACCAATTTAATTGCACTGGGACTAAAACAGACCTGAACACAGAATAgactaattatgtttttttttttttttttttcccccatcaaACAAATATGGAGTGTTGAGTCTTCCCCTCGctcaatatttaaaatccacTCCGGCACGCTGCCTTTATTGATATAGCAcccattttatatacatacatatacatatagatacatctatatatacttATAGATACatctacatatatacacacacatatatagatctAGATAGATAGAACCAAGGTGAAAAAATAGGTATAAAACTTTCAGAACTACCTGGCTAGCGTTTGTTTCACCGAGGAGATCAGGAATGAGAGATGCACTTGTAGGAATGATAAGTGCgttcataaaacaaattcaaaaacaaacgTTCCCATTCGGAGAGAATTGAATATATTTCTATTCACCTGGAGCCATTGGCATTGTAAGACACTGAGGTGATCAGGTTGAGAGGAGCGGGCACAGTCTGGACGAGAGAAACATTTGACGAGGTAGCGCTTCGATTCGATTTTGACTATCTACCATGGGTACCTGGTACTATCGTGGTACACGTACGTTTGCCCTAATGAGGTGTCCTAATAGAGAGAGTGTGCTCTTGTCCAAGTGTTTCCCCCGCCCCCACCGCGGCCGCAGGGTGAGCGACAGAGCGAGTGCATTCTGGGATGGAATCAGTTGCCTCTCGGAGGTGAAAGGGCGGCACGGTGGCCCATCAGAGCATGCGAGGGTTGTACTCTGGCAGCTTCTTCAGCTTCTCCTGTTCCTGCTCCGAGTCATCCCGCGCGATCACGAGGGTGTGCGCGTAGCCCATCGCCACTGCTCCATGTAAACCCCATCCAGCGTCTTCACCTCCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151999 True 1566 lncRNA 0.42 2 5871668 5874136

Neighbor

gene id symbol gene type direction distance location
AMCG00002157 LOC106565901,LOC108438575,LOC104956748,LOC102783840,LOC107751159 coding downstream 44143 5804842 ~ 5827525 (-)
AMCG00002158 NA coding downstream 85636 5760834 ~ 5786032 (-)
AMCG00002155 igsf21,LOC108438574 coding downstream 584886 5264007 ~ 5286782 (-)
AMCG00002153 NA coding downstream 616882 5252375 ~ 5254786 (-)
AMCG00002154 dhrs3,LOC106582983 coding downstream 657260 5201418 ~ 5214408 (-)
AMCG00002166 NA coding upstream 646 5874782 ~ 5883711 (-)
AMCG00002164 LOC107385009 coding upstream 14354 5888490 ~ 5903073 (-)
AMCG00002173 megf6 coding upstream 159708 6033844 ~ 6085952 (-)
AMCG00002172 mrto4,LOC106582960 coding upstream 232054 6106190 ~ 6108484 (-)
AMCG00002177 NA coding upstream 373130 6247266 ~ 6247869 (-)
G121271 NA non-coding downstream 10026 5858001 ~ 5861642 (-)
G121188 NA non-coding downstream 643537 5227674 ~ 5228131 (-)
G121152 NA non-coding downstream 734662 5128038 ~ 5137006 (-)
G121151 lrrc38,lrrc38b,LOC107691331,LOC107568719,LOC107555684,LOC108281009,LOC107685631 non-coding downstream 755651 5110602 ~ 5116017 (-)
G121111 NA non-coding downstream 1149487 4716592 ~ 4722181 (-)
G121288 NA non-coding upstream 59522 5933658 ~ 5937833 (-)
G121384 NA non-coding upstream 336449 6210585 ~ 6213660 (-)
G121403 NA non-coding upstream 403332 6277468 ~ 6277902 (-)
G121443 rpl22,LOC107737574,LOC107703077,LOC103047485,LOC107593380,LOC108414460 non-coding upstream 508297 6382433 ~ 6385919 (-)
G121444 NA non-coding upstream 533569 6407705 ~ 6407915 (-)
G120993 NA other downstream 1651791 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 2085124 3784236 ~ 3786544 (-)
G120907 NA other downstream 2155416 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 2405207 3407485 ~ 3466461 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other downstream 2685315 3173505 ~ 3186353 (-)
AMCG00002167 NA other upstream 101589 5975725 ~ 6015393 (-)
AMCG00002223 NA other upstream 1952505 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 3734614 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 3883289 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 3956383 9830519 ~ 9833224 (-)

Expression


Co-expression Network