G121288


Basic Information

Item Value
gene id G121288
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 5933658 ~ 5937833 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU152015
AAGACATTTACAACATTGTACTATTTAGATATATGGCACtttataaaaagttaaaatatagtatttttggaataaaattgaataatatCAATCCCTGCACATAATTAGCTGCAACAATCAAGATGGGACCCCAGGGGTTGTGCCTCAGTCCTCTTTGTGGTCTCCAGTAACACCTGCACACGCACACGAACAGACAGGCCGGCAAAGGCTAGCGGGTGCCTGGACTCCACCCACAGCCGCCACGTCCCACGGATTGAGATAGACACACTCTCTCAATACCTCTGCCATTAATGAACATTCACACAGGCGGGGCAGAGAGAGGACCTGTTACAGCAAGAGGCACAGGCAGCCTTTGCATTTCCCCAGGTTAGAAACGGAGACGGACAGAAAGACGGATGATTGACTTGACAGATACAGACACCAAGAGTCCAGAATCcagctgttttttattgtactcCTTTAAACACAAACGGTTTTGTTGCATTCTGCCCATTTAAAACATCCCCACACCCTCGAAAGACACCTTCTGCTCCTCCCCTTCCTTTGCACAGAACCAATCAGAAAGCTGCAGAATTTCCACGCACAAGAAGTGATGCCATTTTGTTCATCTAAGGGTGCCAGTGACAGAGGTTAAGTTTTCTCATAGCAAAGTCATAGGAGGCAGGTTAAAAAGGCCCAGAGTCCCTCGATCAGAGAGACGGCTGAGTCGGATAAAGGCAGTCCTATTTTGTAAAATGAGCAAATCTCGGTCATACAGAATTAtatcaatcaaaaacaaaacaagaattagTCCGGGGCTGGCCTGATCTGTGCACCCTTTTAATGGAAACCCAAGAGAAACCAGTCAccttctttttttggtttttgctcTTCCAGTATCGCAGACCAAAGGCTGTGTTCACCCTGATGAAGGGTCTTTTTCAAAccaaatgcattgtgggaaatgttTGAAATCAATACCAAATGGAGATACATGCTTTAGTATAGATGTAGAACAGCCCTCATGGTAAACATGCCTCCCGCGTTCATCTTCGCACCACCTCTCCCCCCTGACAAGTAACAACATTCCTTGACTTTAAAACTCACGATCCTCACAGACATCTCGTAGACGTCGGTTGGATCAAACGCAGGTTCGATCCGTACGCACGCCTGAGAGCAGCGGTCAAGCCTGCGTTTGGTAATTGTCTCTCGCTGTGTGTGTACGTCCGTGTCATCCGCAGTTTGTGTGGAGAATGTTCTGGTTTGGCAGGCAGAGCAGGGGGGAAATGCACAGCACCAGAAGATGTGCTTGGAGATAAAGCTTagattaaacacaataaaatcatcctttctttttttttctttctttacaaaacaaaccaaaaaagcttTAAATCGATAAACACtccataaaaaagaaacatacatcAGCAGGGGGATAAACAAGAgctataaacaaattaaaatgcaaaaagaaagcTGGGATGATAGGGATGAGACGGAGAGGGGATAAGAGGAGCCCGACTCTGTGTGTTAGTGACCGCAGACTGCTTCAAAACGAGCACAAAGGACTACACCGTGCGTGCGCTACTGAACAAATCAGTGAAGAAGGGATGGACACAAAGTTGACAGTGAATGAGATATAAAGAGTAGAAGAGAATCTTAAAGGATCTTAATTTAGCCACCCAGTTCAGTTAGATCTCCTGTAATATCTTCCCTGGCTGTCTAGGGCCCACGTACTAAACCTTATCTTTGATCTCAATGAGAATCGAAACTAGAAAACCGATCACGGTGTTTAACACCTCACAGAATCAATGGCTTTCACACAGGACCGCCACCTCTAGCAGGTGGAAAAAGAGGCACCCAGAAATACAAACCACACAAAATATGTGTTGGTCAAGTAACGAATAAAAAAAGGTGGCAGGGGTTCTACAGCAGCTTCCTGGGACGAAGTGTGTTCGTTTTAATCTGAAAATCAGTTCTGGAGCATCATCAATAATGAACTCTGATCCGCTCCAGATATGCCATGAGGAAAGTTATATGGACACCTCATCTCATCTctacaaaaacaatacagttgAAAACAATGGCAAAAGAATCACCCTTAGTTCAGAGAACAGATGGCCACAGAATAAAACTATGCAATATGggatattgtgttttttgttctgttttttttaaatacagtatttgttaCATGTCTACAGCATAGCAGTTGTGAATTTTCTACtgctacataaaatatatatatatatatatatatatatgcgtatGAGTATTTTGGTGCGATCGTCTATAAAATACTAAGCAATCTAGATGGCTCCTATACAGTTAGTCCAATGCCGATAATTCAGGAATAATAGATCTACTGCCCAGAAGTGTCACTGAAAACCAAGCTCATACCTGgagcaaaaatagaaaaaacagtATCCCACAGTGGAAGATTTCTGAAACAGCATACGGCCTACACACTGATGTTAGAGtccccttcccctctccctctctatccccCCCTCAcacctatctctctctctctctctctctctctcaaaatatCTCTTCTCTTTGGTGTCTGCCCTGGGCCAGCCAGCGGCTTTCCATCACTCACTTCCAGGCagttctctccatctctTGTCCAAGTCAATCACTTTGGGGGGCGGGAGCTTGGCCAGTTCGGCCTTTTCCTTCATGATGTTATTCTTGTAGTCTAGAGcagcgagagaaagagataatttacaaacacacacaggacaataGTCACTAACAACATGTCTGTGATGTCTGGCTGCATGAAGCCTAGAAAATGAAGAGCAAAGCATCAATCCACTCCTTACACTGCCACCTCATTGGCCCGGCCGCAGCAGTGCCCCAGCCCACAGCTAGCGATGGCACAGGCGAGATAGTAGACAGTCCAGCCTATAGGATATATGTCTTACCCAGCCGGATCTCCTCATGATTGCAGATCTTCATCTCTGTAGCGTCCACCTCAAACTCACTGGCCATCGCTTGGCGCCTGCAGGTATATTAcggttattatcattatcattgtcatatttctttttaaaagcacatattTGTGAGCGTGGTGGCACCTTTTGTGTCATTTCTACTCCTTTCTCTGTACACTGCCCTCTATTACCAGGACGTTTTAAGGTTCTTGATATGGGGCCTACTGTGAGAGGGATTCAACAAACAGCCTGCGCATGCCTGAACAAAAGTGGAAATGGGAAACGCCAGCCCTTAATAAAATCCAGTTTGAGCTGGCCTTGTAAAAGGGTGAAATACAGAAAGGTCTCACTGTGCTAAAACAGAGAACCCTTAAATTCCATGATTTCTTGGACGCCGGTGTCCATGCACTTAGGTTAGAATATTCTGGAGAAGGCACTTGTCTTGTTTGAGCGAAGAggctatatgaaatatattgatCCCAGCTGTGCTGCAGTAGTTCCAGAGGAGAATCTGGAGATTCCATAACATGGATTGTTTTGGAATGATAATATTCTCTCATAAAAAGACACAACAGAAGCCTGGAGCAGATCCATCAGCGACATTTTCAGCTAAACAAGTAGAAGAGATGTTATTTCTGGAATCTGACAGAGGATATTGTCATCAGACGAGAAGTCTTTGGTGATGATCCCCACAGGATTCTTAAGAcattatttctttcattataatatttgcaCATCGTGGTAGATTGCcaggatttatatttttgcataaatGAGGCGTTGCATTCGGAGCTGAAACGGTCAAAGTGAAACTAGAATACAGGAAATCAGAGAAACTGTATCATGGTTAATACTGTGGTCGCTAAATCCATGCAGCAGTTACACCGGCCCGGGAGTGGCTCAGTGACGGAGAAGTAAGGAGAGACCCTCACCTCTCTGACTGGCGCAGGTCATATTCCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152015 True 3888 lncRNA 0.43 2 5933658 5937833

Neighbor

gene id symbol gene type direction distance location
AMCG00002164 LOC107385009 coding downstream 30585 5888490 ~ 5903073 (-)
AMCG00002166 NA coding downstream 49947 5874782 ~ 5883711 (-)
AMCG00002157 LOC106565901,LOC108438575,LOC104956748,LOC102783840,LOC107751159 coding downstream 106133 5804842 ~ 5827525 (-)
AMCG00002158 NA coding downstream 147626 5760834 ~ 5786032 (-)
AMCG00002155 igsf21,LOC108438574 coding downstream 646876 5264007 ~ 5286782 (-)
AMCG00002173 megf6 coding upstream 96011 6033844 ~ 6085952 (-)
AMCG00002172 mrto4,LOC106582960 coding upstream 168357 6106190 ~ 6108484 (-)
AMCG00002177 NA coding upstream 309433 6247266 ~ 6247869 (-)
AMCG00002178 NA coding upstream 320214 6258047 ~ 6262305 (-)
AMCG00002185 rnf207b,LOC108434591,LOC107593377,LOC107712689,LOC106572244 coding upstream 419824 6357657 ~ 6381431 (-)
G121274 NA non-coding downstream 59522 5871668 ~ 5874136 (-)
G121271 NA non-coding downstream 72016 5858001 ~ 5861642 (-)
G121188 NA non-coding downstream 705527 5227674 ~ 5228131 (-)
G121152 NA non-coding downstream 796652 5128038 ~ 5137006 (-)
G121151 lrrc38,lrrc38b,LOC107691331,LOC107568719,LOC107555684,LOC108281009,LOC107685631 non-coding downstream 817641 5110602 ~ 5116017 (-)
G121384 NA non-coding upstream 272752 6210585 ~ 6213660 (-)
G121403 NA non-coding upstream 339635 6277468 ~ 6277902 (-)
G121443 rpl22,LOC107737574,LOC107703077,LOC103047485,LOC107593380,LOC108414460 non-coding upstream 444600 6382433 ~ 6385919 (-)
G121444 NA non-coding upstream 469872 6407705 ~ 6407915 (-)
G121445 chd5,LOC107737210,LOC107691315 non-coding upstream 475180 6413013 ~ 6413274 (-)
G120993 NA other downstream 1713781 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 2147114 3784236 ~ 3786544 (-)
G120907 NA other downstream 2217406 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 2467197 3407485 ~ 3466461 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other downstream 2747305 3173505 ~ 3186353 (-)
AMCG00002167 NA other upstream 37892 5975725 ~ 6015393 (-)
AMCG00002223 NA other upstream 1888808 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 3670917 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 3819592 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 3892686 9830519 ~ 9833224 (-)

Expression


Co-expression Network