G121443 (rpl22,LOC107737574,LOC107703077,LOC103047485,LOC107593380,LOC108414460)


Basic Information

Item Value
gene id G121443
gene name rpl22,LOC107737574,LOC107703077,LOC103047485,LOC107593380,LOC108414460
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6382433 ~ 6385919 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU152207
TGGATATCTAGCAAGTAATCAATCATTTTAAGTGACATGAAATCACAGAAATCAAGTTTTACACCAAACCCACGTCACAGGGAACAGGCTTTCACTGGAACCCCCTCCACCCAAAAAGCAGAGGCCAGGCCAAGTGCGTTTTGTCcatattgacattttatttaatatacaaaacagGTGAAGAGATTAATCctcatcctcttcctcctcctcgtcctggTTGATCTGGAAGTATCGCAGCTCGTAGCTCTCCTTGGTGTTGGCCACCACGCGCAACCAGTCCCTCAGGTTGTTCTTCTTCAGGTACTTCTTGGTCAGATACTTCAGGTATCTGAAGACCAAGCAGGCAAGCAAAAGAACATTCgtttattttcaaaagacaGCAAGGAAACCATGCCTTCCCACATCCAGGGCTTGGCCACCATATAGAAGTCATTGCAGGGTCACATTATGTAGCCTCAGGActtgtatatacacatttaaataaaataatgaaactgcACGATTGCCTACCATTTTATaacttcattcattcattatacGGGTTTCTGCTGCTTAAACTAGTctagtggttctcaatcctggaggagcccctaccctgctggtttttgttccaaccgagctctcaattacttaattgcacccttaattgaattaaatagtTCAAtcaagtaattgagagctcagctggaacaaacaccagcagggtaggggctcctccaggaccagggctgggcaCCACCGGGTTAGACAGTCATCACTGCAGCACAGTTCAGCTACACCTTTATCAAGTGCAAGTtcttaaaggaaaaacacattgcagCCAGCAACAGTAGGCAGTAGGCAAGCATCGCAATATTATACTATTGAACAAGCCACTAACGATCTGGTCCGATAATCACGGCAAATCGCACGAGTCAGAGCAGGGCAGCACTAGGAGACGCAACATTTGGTGCTTTAATAGGATTTACAGTGTGGAGAAGAGTGCAGCCTGTGGAAGAGGTGAAGTTGCTTTAATAAGGGGGTCGATAGTCGCTGCCTTCTATTGCGGCGAGAGGCAACGCACCTGGGCTTAGACTCGAGTCGCAGCTATGAGTGCTGCCGACTTCCTTCACGCCGAACACGGCCGAGAGGGGCAAAGGAAGTGCGGGATTATACGGGAAGATCAGAGGAGACGCGTCATAATTAAGCCTAATAAAGGACTGCGAAGCAGAGCCAAAAACTACTGAACACACCTGAGCAAGTCAGCAGTTTGTGCTCTATACTTCATTGCAGACTTTGACGTAGTTTAGAGTGCTATAGTAAACACTTGTTAAACAGGGCATACTGCCACATTGATACCATTTGCCTTTAATAGACTCCTCGACGATGATCCCAATGCACAACAGGACACATAGAACATGGAAACCATACCAATTAAATTAGGAGGGGAAAACAAATCGATAGCAAGAATCAACATTCGCCCATATCCTCCTCAcgacaataaaacacacaagtaGTTACGGCTTCATTGGAAAGTGAAGAAAATCAGATCGGAAAGGAGGCTTTGAACCAGGAGgtggaaaataaagaacatgACACTCCATGCCCGTGTTGATGAGACTTCTGGCTTTTATCGATGCACTGGTTATACAGCTATATGACGGGGGTATTTCAATCTCTGTCCTGTACAAACTCAGTTGTAGCTATGAAGTGATCCGTGTCAGCGGCACTGAAACAGTTACAAATAGCGGAGACTAAACTGAAAGAACTGAACGGAGGCAGTGTGCATCAGTTGAGTAAATGAGAGGCCTCCCCCACAACAGAGTAAAACACGTCACTCTCAAGacctcacgcacacacacacacattcaaacatcCGAGATGTCAATGCTCATCTCAAAACCGTCCGGATGACTTTCAAGTGCATTCAGATGCTGCCACTGGTCGTGTGGTTTAAGGACTCTCTGCCACACGGTCACAGCACCTGAAGCTACAGTGCCGTCGTGGCATTTCCCCTCGAGTTATGTCAAGTTCCCCCGAGAACCTGTGGTTCTGAAGCTTTCCACGAATGATTCACTCAAAACAGCACTCAACGAGCCGCCGCTTCGCCCGACGCCTGACCTTTTAGAGAAGGGGACCTCAGATGTCACCGTGATCTTGCTCTTGCTCCTCTCGATGGTCACCACGCCGCCGCCCAGGTTGCCGGCCTTCCCGTTCACCTTGATCCTCTCCTGCAGGAACTGCTCCTGGAGAAAAGTTCGCTGCGTCCATGATGCCATCTTCCACAGGGTGGGTGCAGTCCAGCGTGAACTTCAGCAcctgcttcttcttcttgccACCCTTGGTGCTTTGCTTTTTCTCGGAGCCATGTTGATTCACGAACTCAGAAAGGAAGAGGCATCCAACGCGCATGCGCTTTCATGTCGGCCTGGGTTTAATCGAAAGCAGAGCTCATCGATCCGATCCGTGACTCTGGG
>TU152212
TGGATATCTAGCAAGTAATCAATCATTTTAAGTGACATGAAATCACAGAAATCAAGTTTTACACCAAACCCACGTCACAGGGAACAGGCTTTCACTGGAACCCCCTCCACCCAAAAAGCAGAGGCCAGGCCAAGTGCGTTTTGTCcatattgacattttatttaatatacaaaacagGTGAAGAGATTAATCctcatcctcttcctcctcctcgtcctggTTGATCTGGAAGTATCGCAGCTCGTAGCTCTCCTTGGTGTTGGCCACCACGCGCAACCAGTCCCTCAGGTTGTTCTTCTTCAGGTACTTCTTGGTCAGATACTTCAGGTATCTTAGAGAAGGGGACCTCAGATGTCACCGTGATCTTGCTCTTGCTCCTCTCGATGGTCACCACGCCGCCGCCCAGGTTGCCGGCCTTCCCGTTCACCTTGATCCTCTCCTGCAGGAACTGCTCCTGGAGAAAAGTTCGCTGCGTCCATGATGCCATCTTCCACAGGGTGGGTGCAGTCCAGCGTGAACTTCAGCAcctgcttcttcttcttgccACCCTTGGTGCTTTGCTTTTTCCAGCGGAGCCATGTTGATTCACGAACTCAGAAAGGAAGAGGCATCCAACGCGCATGCGCTTTCATGTCGGCCTGGGTTTAATCGAAAGCAGAGCTCATCGATCCGATCCGTGACTCTGGG
>TU152214
TGGATATCTAGCAAGTAATCAATCATTTTAAGTGACATGAAATCACAGAAATCAAGTTTTACACCAAACCCACGTCACAGGGAACAGGCTTTCACTGGAACCCCCTCCACCCAAAAAGCAGAGGCCAGGCCAAGTGCGTTTTGTCcatattgacattttatttaatatacaaaacagGTGAAGAGATTAATCctcatcctcttcctcctcctcgtcctggTTGATCTGGAAGTATCGCAGCTCGTAGCTCTCCTTGGTGTTGGCCACCACGCGCAACCAGTCCCTCAGGTTGTTCTTCTTCAGGTACTTCTTGGTCAGATACTTCAGGTATCTTTTAGAGAAGGGGACCTCAGATGTCACCGTGATCTTGCTCTTGCTCCTCTCGATGGTCACCACGCCGCCGCCCAGGTTGCCGGCCTTCCCGTTCACCTTGATCCTCTCCTGCAGGAACTGCTCAGTTCGCTGCGTCCATGATGCCATCTTCCACAGGGTGGGTGCAGTCCAGCGTGAACTTCAGCAcctgcttcttcttcttgccACCCTTGGTGCTTTGCTTTTTCCAGCGGAGCCATGTTGATTCACGAACTCAGAAAGGAAGAGGCATCCAACGCGCATGCGCTTTCATGTCGGCCTGGGTTTAATCGAAAGCAGAGCTCATCGATCCGATCCGTGACTCTGGG

Function

symbol description
rpl22 Enables RNA binding activity. Acts upstream of or within T cell differentiation in thymus. Predicted to be located in ribosome. Is expressed in intermediate cell mass of mesoderm. Orthologous to human RPL22 (ribosomal protein L22).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152207 True 2459 lncRNA 0.47 3 6382433 6385919
TU152212 False 687 lncRNA 0.51 4 6382433 6385919
TU152214 False 680 lncRNA 0.51 4 6382433 6385919

Neighbor

gene id symbol gene type direction distance location
AMCG00002185 rnf207b,LOC108434591,LOC107593377,LOC107712689,LOC106572244 coding downstream 1002 6357657 ~ 6381431 (-)
AMCG00002178 NA coding downstream 120128 6258047 ~ 6262305 (-)
AMCG00002177 NA coding downstream 134564 6247266 ~ 6247869 (-)
AMCG00002172 mrto4,LOC106582960 coding downstream 273949 6106190 ~ 6108484 (-)
AMCG00002173 megf6 coding downstream 296481 6033844 ~ 6085952 (-)
AMCG00002187 NA coding upstream 42446 6428365 ~ 6447619 (-)
AMCG00002191 espn coding upstream 65355 6451274 ~ 6500272 (-)
AMCG00002193 NA coding upstream 280195 6666114 ~ 6667451 (-)
AMCG00002198 NA coding upstream 297113 6683032 ~ 6706524 (-)
AMCG00002196 NA coding upstream 327078 6712997 ~ 6713197 (-)
G121403 NA non-coding downstream 104531 6277468 ~ 6277902 (-)
G121384 NA non-coding downstream 168773 6210585 ~ 6213660 (-)
G121288 NA non-coding downstream 444600 5933658 ~ 5937833 (-)
G121274 NA non-coding downstream 508297 5871668 ~ 5874136 (-)
G121271 NA non-coding downstream 520791 5858001 ~ 5861642 (-)
G121444 NA non-coding upstream 21786 6407705 ~ 6407915 (-)
G121445 chd5,LOC107737210,LOC107691315 non-coding upstream 27094 6413013 ~ 6413274 (-)
G121447 NA non-coding upstream 34122 6420041 ~ 6424298 (-)
G121689 NA non-coding upstream 1175158 7561077 ~ 7562747 (-)
G121716 NA non-coding upstream 1271913 7657832 ~ 7658851 (-)
AMCG00002167 NA other downstream 367040 5975725 ~ 6015393 (-)
G120993 NA other downstream 2162556 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 2595889 3784236 ~ 3786544 (-)
G120907 NA other downstream 2666181 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 2915972 3407485 ~ 3466461 (-)
AMCG00002223 NA other upstream 1440722 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 3222831 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 3371506 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 3444600 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 3450999 9836918 ~ 9853075 (-)

Expression


Co-expression Network